<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05345

Description Uncharacterized protein
SequenceMLANVESEEEQRVRFQVELEFVQCLANPNYLNHLAQRDVFKKPAFVNYLKYLLYWKLPEYPQCLHFLELLQSEHFRQAMVSLPNCNYIEDQMILQWHDPDDGVVLPSRCETCKVVVAELEARLLETGRSPDTTYAGRGKVKKYRDSDLRLIETLENVCDRVTEYSVHKEYKDSRRFAKRQSNTMKTLHGLVEKGVQVDLGIPYELWDWPSVEVTRMKMDCESMIENHESAIEAWYREHQDVPLIKYLCAERVLRPSEQDCLNDPVENLAGRSLKPLEDFRVRTLSGGAVTVVSAVLMALLFVSELRSYLSTEIVEELFVDTTVGDEHLKINFDVLFPALDCEFISVDVMDIAGQLQSNVTDSVWKEVVGELPTTVNPSKVSEPGSTVTEPSSTNPCGSCYGAESHAGMCCNTCEDVKRAYLKKGWVIGELDQIVQCRNEHWVRKLRSHRGVGCRVHGWLNVSKVAGNFHIAPGSTVRDAHSHVHSLHSVGPQSFNTSHTVRHFSFGTPYPGKQYPLDGQSTITESGGLMVHYFVKIVPTIYEDSVKNRILTHQFSVTKHQRTIEAADMAGLPGFFVSYEFSPLMVQLSHRDTPFAHFLAEVCALIGGIFTVASLLDSCLYKLSNILARKLSMEKQN
Length636
PositionMiddle
OrganismTrichuris muris (Mouse whipworm)
KingdomMetazoa
Lineage
Aromaticity0.09
Grand average of hydropathy-0.244
Instability index41.56
Isoelectric point5.83
Molecular weight72133.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05345
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.80|      15|     229|      24|      43|       1
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   24-   42 (18.33/21.09)	CLanpNYLnHLAQRDVFKK
   63-   77 (28.47/11.04)	CL...HFL.ELLQSEHFRQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.24|      13|     230|     103|     123|       2
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   80-   92 (25.27/13.67)	VSLPN....CNYI....EDQM
  103-  123 (10.96/22.86)	VVLPSrcetCKVVvaelEARL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.60|      33|      87|     354|     392|       3
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  354-  392 (49.96/47.63)	QLQSNvtDSVWKEVVGELpttvNPSKVS.....EPGSTVTEPSS
  444-  481 (56.64/36.47)	KLRSH..RGVGCRVHGWL....NVSKVAgnfhiAPGSTVRDAHS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.14|      12|      27|     132|     146|       5
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  132-  146 (17.46/23.84)	TTYAGRgkvKKYRDS
  162-  173 (22.68/17.77)	TEYSVH...KEYKDS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.96|      17|      30|     204|     220|       6
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  204-  220 (34.01/23.35)	ELWDWPSVEVTRMKMDC
  232-  248 (32.94/22.38)	EAWYREHQDVPLIKYLC
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05345 with Med31 domain of Kingdom Metazoa
Unable to open file!