<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05340

Description Uncharacterized protein
SequenceMASSQGQSNAVVGGVPVDQAYLLPLNKLKTQVLELKHVLAVIMRTAGDLIKQGCSENDEPTAEVSAARTELGKSLDLFYCGCDQIEHTLLLILDCQRTYSDLSQFLPVTVVGPLGRFSSEKADETVAAASKGTVNHTQFVSLVQSQVLFVQNTPRISSIMQSCALDSPYMMTDVEAPSSSFAVQFVNMDDRLAQKSIKVEQLTEETNTFEQSSYSALEGFLRNVGESIIPKSEPLAEVISKSRSTTASPVVNASTSMAQPVSTFHKVESNNEGTLQLTCSAPLIHSSALQQTAMSQHILVPIAHNPDANGYQSGSTVLLPLVPNVLPDGSYEVVFSGLNIPQQQEVQNAGRSALIFLINGNEEERLSVMPVSTANLNQPNETIVAGTCARTTADTTVAQPVSSGKGTARSIDTGVFQCEFCDYANAKRYLVVRHMKSHSQERPFKCPMCERCFKTNSSLQNHVNTHTGLRPHQCKLCDLAFTTSGELIRHVRYKHTMEKPHKCSVCNYASVELSKLRRHIRSHTGERPYRCPQCDYASPDTYKLKRHLRVHTGERPYQCEQCQQRFTQSNSLKAHKNHCTGMTRPRNRVGQTKASKNCDSSSAM
Length604
PositionTail
OrganismTrichuris muris (Mouse whipworm)
KingdomMetazoa
Lineage
Aromaticity0.05
Grand average of hydropathy-0.371
Instability index48.69
Isoelectric point8.13
Molecular weight66451.52
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05340
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     267.06|      27|      27|     508|     534|       1
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  423-  449 (47.06/25.80)	YANAKRYLVVRHMK.SH.SQ.ERPF.KCPMC
  451-  477 (47.93/26.40)	RCFKTNSSLQNHVN.TH.TG.LRPH.QCKLC
  479-  506 (42.66/22.77)	LAFTTSGELIRHVRyKH.TM.EKPH.KCSVC
  508-  534 (53.27/30.08)	YASVELSKLRRHIR.SH.TG.ERPY.RCPQC
  536-  562 (54.27/30.77)	YASPDTYKLKRHLR.VH.TG.ERPY.QCEQC
  564-  591 (21.86/ 8.44)	QRFTQSNSLKAH.K.NHcTGmTRPRnRVGQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.68|      30|      33|     172|     204|       2
---------------------------------------------------------------------------
  172-  204 (45.53/38.08)	TDVEAPSSSFAVQ.FV.NMDDRLAQKSikvEQLTE
  206-  237 (42.14/27.28)	TNTFEQSSYSALEgFLrNVGESIIPKS...EPLAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.11|      27|     138|     253|     279|       3
---------------------------------------------------------------------------
  253-  279 (49.13/27.96)	ASTSMAQPVSTFH.KVESNNEGTLQLTC
  370-  388 (25.63/11.52)	.......PVST.A.NLNQPNETIVAGTC
  393-  418 (37.35/19.72)	ADTTVAQPVSSGKgTARSIDTGVFQ..C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.60|      17|      33|     306|     322|       4
---------------------------------------------------------------------------
  306-  322 (29.42/21.81)	PDANGYQ.SGSTVLLPLV
  341-  358 (24.18/16.49)	PQQQEVQnAGRSALIFLI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05340 with Med29 domain of Kingdom Metazoa
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