<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05337

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMAATPTEQADEPLPPVAIESTNEWQIYDILMNGQERYLQPLTFSDHVARLTHMIDWQSLVGSKLSMSEMNSPEEEVQEAPDTPNVHVWDNVAKELHAALTEINVVLDVIKVTLHKRYMLFDTVSREPSEESKPANKASEAYALVAKRKSLSLTSNILLDFVEKQRQMSNSQLIPGYVGMQNDECSFLRELTELRKCWRLKKARNIILGDLGFRSYGPKFRTCSTFEIHRRQGQQFEQQQASTSTAVTLPSLGSSQSSTVEVMLPADLKKQLILKCFIIPDVADDKLICTLLESVDPSLYQSTNKRSTSWQETLEKAQKTLLCRELFSILSKESLNVADKGCIVRGDSIYVQLNGDYILLVTLVDALKCNQPSTDAQRTVATSVEDLFVLEQNLMQIYLNEVDAITNFSIARPISAPTYNASSRIRLAGPNALSREQLGTEGLSDKLLLEQIAMQANHYILLNNVKTALEQFAEEQRDPVVSIHWCPETNRTTTLARVQMITPFYEYCSRSNLIVEVFANTIRVTMRDLEVVEFANNVEELIIYLRFKCRQNVISTAGIMARPWCWQTLSCYMNTVDVHNMPAPVTALISPCGTKVLYITYPLHCAQPKVYIHYVQQGGDNLDNNTFDASKLMDSTGDCSQVDLNLLCGTSFLQKLETLLVIL
Length662
PositionHead
OrganismTrichuris muris (Mouse whipworm)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy-0.170
Instability index48.62
Isoelectric point5.27
Molecular weight74667.64
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05337
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.76|      31|      60|     371|     401|       1
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  371-  395 (33.58/21.89)	.................................PSTDAQRTVAT.SVEDLFVLEQNLMQ
  396-  454 (29.58/18.35)	IYLNEVdaitnfsiarpisaptynassrirlagPNALSREQLGTeGLSDKLLLEQIAMQ
  459-  489 (33.60/21.91)	ILLNNV......................ktaleQFAEEQRDPVV.SIH..WCPETN...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.58|      18|      53|      91|     109|       3
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   91-  109 (24.53/20.15)	VAKELHAALTEiNVVLDVI
  144-  161 (29.05/18.82)	VAKRKSLSLTS.NILLDFV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.98|      34|      53|     517|     550|       5
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  517-  550 (56.20/42.48)	FANTIRVTMRDLEVVEFANNVEELIIYLRF..KCRQ
  571-  606 (56.79/43.01)	YMNTVDVHNMPAPVTALISPCGTKVLYITYplHCAQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05337 with Med17 domain of Kingdom Metazoa
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