<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05325

Description Uncharacterized protein
SequenceMQAVKVEQLKRRLLSALDEEKQVTNVKAAGDAILLIERTTLTKESLEASRLGLLINEVRRKNQSHFPDFARRCRALIKEWQKLISSTSATTADQQLNCKQQQQHPVEQYPVNKCHASGGYEQRSQKLVTDKHKSNNVVLESLSSPRPPVVDVAMTLAATVAPLYKENSNNNKNKNNGIVSIDDEPSQLKIRIKLGRSEEASIVKTVDQQQAPVNRSRDQVDLVGIEQAENRRKRKHTIGSERSSHGVTVAPSIGGLGLNLNGEVTPKANGTLKASSSSSGGGSVSDDGSSTMGAGGAAAAAAAAANEEADGCGGAQGGGRLPKLKSTAALVAEMTKSYPDTVAVHIDEENEEYIDDEDQQGARNATMIAGDHQSTAAAIAEETRSLASSSAATTTTGLLLLRGGHQQHHQQTTTDFVLDSRGRSELMETKCAMLRRFLDNIDSQVASPPFAHDQPHQPSLDGWSKINNGDGWSSTAASTSTSRSSSPSAANVSISRQPPSMAADSPPLPTPTVGIEKGSTLVLCSDMVDWQAMLPSLDDLKNVVDEDGVVVEGPLEEEEGTETDGCRRCRHRLRRREQLVESHLLLDDCSTKLSNDQLRFRDLNDDDEGNSATSSNVVRGRRVSLEQSFRHCDRFIALHSRVLTKLRNGRQVLAMPYVDIGIPDFLEYGFRDVDNFVVSRSEVGW
Length685
PositionUnknown
OrganismTrichuris muris (Mouse whipworm)
KingdomMetazoa
Lineage
Aromaticity0.03
Grand average of hydropathy-0.583
Instability index55.05
Isoelectric point5.86
Molecular weight74339.82
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05325
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.03|      32|      46|     306|     337|       1
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  306-  337 (54.81/32.28)	NEE.ADGCGGAQGGGRLPKL.....KSTAALVAEMTKS
  350-  385 (38.52/20.60)	NEEyIDDED..QQGARNATMiagdhQSTAAAIAEETRS
  392-  417 (33.70/17.16)	ATT.TTGLLLLRGGHQQHHQ.....QTTTDFV......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.31|      18|      42|     625|     642|       2
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  625-  642 (34.11/22.64)	LEQSFRHCDRFIALHSRV
  666-  683 (32.20/21.00)	LEYGFRDVDNFVVSRSEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.61|      37|      42|     171|     212|       3
---------------------------------------------------------------------------
  171-  212 (50.79/47.70)	NKNKNN.GIVSIDDEPSQLKIRIKLGrSEEASIVKTVdqqqAP
  214-  251 (58.81/38.77)	NRSRDQvDLVGIEQAENRRKRKHTIG.SERSSHGVTV....AP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     120.60|      37|      46|     537|     576|       4
---------------------------------------------------------------------------
  537-  576 (58.69/40.17)	LDDLKNVVDEDGVVVEGPLEEEEGTETDGCRRCRHrlrRR
  586-  622 (61.91/35.24)	LDDCSTKLSNDQLRFRDLNDDDEGNSATSSNVVRG...RR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.23|      23|      42|      60|      84|       5
---------------------------------------------------------------------------
   60-   84 (37.92/32.61)	RKNQSH....FPdfARRCRA...LIKEWQKLI
   99-  128 (32.30/20.22)	KQQQQHpveqYP..VNKCHAsggYEQRSQKLV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.90|      12|      24|     254|     265|       6
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  254-  265 (20.79/13.17)	GGLGLNLNGEVT
  280-  291 (21.11/13.50)	GGGSVSDDGSST
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.17|      11|      48|     448|     458|       7
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  448-  458 (25.67/15.94)	PP.FAHDQPHQP
  498-  509 (19.50/10.44)	PPsMAADSPPLP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05325 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EASIVKTVDQQQAPVNRSRDQVDLVGIEQAENRRKRKHTIGSERSSHGVTVAPSIGGL
2) LNLNGEVTPKANGTLKASSSSSGGGSVSDDGSSTMGAGGAAAAAAAAANEEADGCGGAQGGGR
3) SQVASPPFAHDQPHQPSLDGWSKINNGDGWSSTAASTSTSRSSSPSAANVSISRQPPSMAADSPPLPTPTVGIE
4) YPDTVAVHIDEENEEYIDDEDQQGARNATMIAGDHQSTAAAIAEETRSLAS
199
258
443
338
256
320
516
388










Molecular Recognition Features






MoRF SequenceStartStop




NANANA