<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05310

Description Uncharacterized protein
SequenceMDIDDWSRPEVVQLIDHYIREPNVSIEQLKKDIQRITRKNVTTRTLQRHMQIFLQESAAYETHSKQDATCPVDTGQLAHRIQDLRNRTRRPRKLAQASTDTEGPSSRRKQPTQRISSMQRIVRSYRSRRYKARRKYFLAKRCKEELEDELSATTTTPDAPTKTESPATTARVITSTTVTESKGTMPTTPKKAEETTVIVETERMTSETTEEPQWITTTSISTTTMTEAKTSMLATETITEITEKAMGHHAETTVSIPEGGEWLVPTAMTPCTVAETDLETLERTIDLSWIRSITEGMMVSCLTLEPDDITWTKQETAESTKSGMTTPTNPWRTEEQETTTTRDNLQYPQITEHETQESHLSAMKQAELLRSSNAISLQDFTSTAANLPPTVSQISPISTLLNSEFCKQPTHMSPITCTNDPNTSTFPKPESTCLSSSIFTTSQTSPSTVAMQANLVNQQFQSMLNHLDHCLNALRLLRNEVVSVHYRIWKGDWDVQIEGEKTIEERLEFINQIYDSLESHAKQLPTSTPMTVQMERLSRFLHDGQIDPYTRELYEKSLDASTWMDTTNQLLQMYAEFLRPVVGNRRRSIMTERPLTFSSYGLSSSPQSVFEQTLASVLKDPSSKKIGLVGRYLEKTALSAIVEFKFGQVVDKQYVCLLKMLMVVNSGVPEYVQMIAPHEDWSYLDIGTEQVDIHKESRYLVYRKMSVQANIHLMQTIMPCIDIRNAHTLSYVLSLFSKFSGVFETKCRVCKFTFLPKKMKRLFNYLRATVAHVEENYVKHEKAAEIEGAEHIIVNSSALHCPICLSVFISAPFILRCGHSFCQKCIKKLVKESSSEDEHGMILCPICRQEISCEISFTKNYLADALLQSFQDVVRDNIEHVMDSSLMLSVVVFI
Length894
PositionTail
OrganismThelazia callipaeda (Oriental eyeworm) (Parasitic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Thelazioidea> Thelaziidae> Thelazia.
Aromaticity0.06
Grand average of hydropathy-0.426
Instability index56.13
Isoelectric point6.13
Molecular weight101756.75
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
metal ion binding	GO:0046872	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05310
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     277.47|      61|      61|     140|     200|       1
---------------------------------------------------------------------------
   83-  123 (47.95/23.54)	....................DLRNRTRRPRKLAQASTDTEGPS..................SRRKQPT..QRISSMQRIVR
  140-  200 (101.17/58.61)	KRCKEELEDELSA..TTTTPDAPTKTESPATTARVITSTTVTE..................SKGTMPTTPKKAEETTVIVE
  202-  239 (53.71/27.33)	ERMTSETTEEPQW..ITTT...............SISTTTMTE..................AKTSMLAT....ETIT....
  240-  298 (28.16/10.49)	.....EITEKAMGhhAETTVSIPEGGEWLVPTA..MTPCTVAEtdletlertidlswirsiTEGMM...............
  299-  335 (46.47/22.56)	..........VSC..LTLEPDDITWTKQ..ETAE......STK..................SGMTTPTNPWRTEE......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     146.35|      35|      56|     372|     412|       2
---------------------------------------------------------------------------
  336-  370 (30.06/ 7.15)	QETTTTRDNLQyPQIteheTQESHL.....SAMKQAELLR.....
  378-  412 (63.56/34.96)	QDFTSTAANLP.PTV....SQISPI.....STLLNSEFCKQPTHM
  416-  437 (24.14/ 6.08)	.....TCTNDP.NTS....TFPKPE.....STCLSSS........
  439-  467 (28.58/ 8.56)	..FTT..............SQTSPStvamqANLVNQQFQSMLNHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.58|      42|      54|     535|     578|       3
---------------------------------------------------------------------------
  535-  578 (64.35/56.02)	ERLSRFLHDGqIDPYTRELYEKSLdASTWMDTTNQLLQMYAEFL
  592-  633 (69.23/49.56)	ERPLTFSSYG.LSSSPQSVFEQTL.ASVLKDPSSKKIGLVGRYL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.33|      12|      14|      23|      34|       4
---------------------------------------------------------------------------
   23-   34 (19.19/11.76)	NVSIEQLKKDIQ
   40-   51 (21.13/13.69)	NVTTRTLQRHMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.26|      27|     288|     477|     503|       6
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  477-  503 (48.63/36.67)	LRNEVVSVHYRIWKGDWDVQIEGEKTI
  766-  792 (44.62/33.03)	LRATVAHVEENYVKHEKAAEIEGAEHI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05310 with Med27 domain of Kingdom Metazoa
Unable to open file!