<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05308

Description Uncharacterized protein
SequenceMASCEDEVLRIGKKFERMIQGTKSVSFFALPGIRLIRHYFRYIIQMDSAMELLDALSTLPVDINILTKTRIGMTINDLRKKTSDEHIAKRAKALIKEWKVLLAGRTSSNSKNDAKSSLAKNSVSASASNGNSKALSQSSDLQKNISGSANSLVTPAAKKQLLVDEIRNKCATMILDALISKDLPDGTLDPEDLAIRTEKKLFEVHRGTSEKYRAALRSRVFNLRDKKNPALRENVLIGAVTPEKYV
Length246
PositionUnknown
OrganismThelazia callipaeda (Oriental eyeworm) (Parasitic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Thelazioidea> Thelaziidae> Thelazia.
Aromaticity0.04
Grand average of hydropathy-0.336
Instability index39.45
Isoelectric point9.80
Molecular weight27304.29
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05308
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.86|      19|      19|     109|     127|       1
---------------------------------------------------------------------------
  109-  127 (30.46/19.40)	NSKNDAKSSLAKNSVSASA
  131-  149 (31.40/20.19)	NSKALSQSSDLQKNISGSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.05|      16|      18|     186|     203|       3
---------------------------------------------------------------------------
  186-  203 (22.15/20.91)	GTLDPEDLAIRTekKLFE
  207-  222 (26.90/17.97)	GTSEKYRAALRS..RVFN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05308 with Med26 domain of Kingdom Metazoa
Unable to open file!