<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05306

Description Uncharacterized protein
SequenceMTVPTTMTPQHMHRQQRYGMTMMQPGQQPVQIGSGQYVQNSQMQPRILTMSDALSRLPPEVQQMAQQQINAETNAEKKRQIALGFIQGRVRLAQQYPGHGTINTGGMMINVGPNQQVGNTQMVRMGPVQAGPVPYPAQSVSLQTGMGQMGPTQVTVQRIPSNYMVNGMNSQNMQYQSQDAGSMQNYNSPQQMTLTQPSSVGSSVQHSSSLHHKGPSSVPSAIYAQHHSGESSTPTHNAASSENDKSSDEPLYSQKLDLLKPYHEHIKRLLERNRLDGQAPKSKFERLLEIMENRRKVELKLLEKLVVSVRNLIEHDSLCYSLTEALRVEIGDAPKPVVPDPWADFNQYNIRVPDKVINLIKEEKSRIKEGKDLIPPKRIKKEENDGSTLDRIAVICQDGSRLELSQEASDQLRSYNYRFDPEFVPISEDCTEVQVFIDNDILLVPPLRLVVPLNYPDSKASIWRDRWSYGRINLVDINTQFDKRLNMTVNCRTITEIINCWKLASLHVLKIGSTNNG
Length517
PositionTail
OrganismThelazia callipaeda (Oriental eyeworm) (Parasitic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Thelazioidea> Thelaziidae> Thelazia.
Aromaticity0.05
Grand average of hydropathy-0.616
Instability index46.18
Isoelectric point8.61
Molecular weight58262.55
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05306
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.32|      17|      17|     166|     182|       1
---------------------------------------------------------------------------
  166-  182 (30.75/15.48)	NGMNSQNMQY.QSQDAGS
  185-  202 (24.57/10.96)	NYNSPQQMTLtQPSSVGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.37|      16|      17|     255|     271|       2
---------------------------------------------------------------------------
  255-  271 (23.52/22.17)	KLDLLKPyHEHIKRLLE
  274-  289 (27.85/19.62)	RLDGQAP.KSKFERLLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.83|      23|      77|      16|      40|       5
---------------------------------------------------------------------------
   16-   38 (46.36/21.86)	QRY.GMTMMQPGQQPVQ.IGSGQYV
   94-  117 (36.48/15.01)	QQYpGHGTINTGGMMIN.VGPNQQV
  145-  163 (19.99/ 6.34)	....GMGQMGPTQVTVQrIPS.NY.
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05306 with Med15 domain of Kingdom Metazoa
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