<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05304

Description Uncharacterized protein
SequenceMGVMNEEKAQTDGSWVANLVTRTHSEKLSPIEFGALLKRRITTSGCNEQQIRTIASMLLRFATSSVTPDHRMLTCLETLVKADVLRWAVFIDVIAEFRQFSREYCIEALATILRNSVPLLRCNYTSEKECLELSGSLMTVLNWCLLALEYSLKNENECSTLALINCACAYANSKFVRTLLYIHEHIGSESVNYVVEAAVSFAQSYPDCKELKTMIEALQQFGSIPIERIDDNIGGSVKQSHPAILTLVSVFEGFRMTKKVDQMADSFFELAEILEFPFSKMFEDMIRASLLIMLDAKESLGEDLVASQAFYYVKLPQIVKHLLTLGAPLDDLISALDTICDNKTLLNQVDMKTKTNTFQHLLEQMAAAGVIDERIVKNLLEKRWDFRSQYWPELFQMFAQTSTTPVHQPLILRANSAKMAVDKILRQPNNAVINVLLKLASGSGGLFTFDSVCASFCADGNLTYFSSKLAMINGQSERPAEGLDMDDERQRALAFNLSFILLTRMRFIYNDLRPSELVNGTIRSMDNTHSCFYKFASQYGWTAADSFLASNIYTNEQKAAFIDRINMLKHGQPFWDARTVNYAELVDFVPLIGELLLDDFKMTKPESYEHLHENIKVILF
Length620
PositionTail
OrganismThelazia callipaeda (Oriental eyeworm) (Parasitic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Thelazioidea> Thelaziidae> Thelazia.
Aromaticity0.10
Grand average of hydropathy-0.004
Instability index43.69
Isoelectric point5.41
Molecular weight70214.13
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05304
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.09|      52|      54|     270|     323|       1
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  259-  313 (74.43/61.00)	KVDQMADSFFeLAEILEFPFSKMfeDMI..RASLLIMLDAKESLG..EDLVASQAFYYV
  314-  370 (70.66/50.64)	KLPQIVKHLLtLGAPLDDLISAL..DTIcdNKTLLNQVDMKTKTNtfQHLLEQMAAAGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.41|      21|     189|     371|     394|       2
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  371-  394 (33.45/34.54)	IDeRIvkNLL...EKRWDFRSQYWPEL
  562-  585 (35.97/24.52)	ID.RI..NMLkhgQPFWDARTVNYAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.05|      27|      48|     157|     187|       3
---------------------------------------------------------------------------
  157-  187 (42.71/37.04)	ECSTL.ALINCACAYANSKFVRtllyIHEHIG
  207-  234 (42.35/26.57)	DCKELkTMIEALQQFGSIPIER....IDDNIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05304 with Med24 domain of Kingdom Metazoa
Unable to open file!