<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05297

Description Uncharacterized protein
SequenceMGLTKQYLRFSPNGICNVVASSNGTVAAITDNICAASACENVHFYNMKLGEKVDEIKGSDKIVSTMKFSGNRQFLAVGFVDGTLRLYDRKNDDRSTYITFCGHRTAVNCIAFSKDSLVLATGGKDSAVVTWDIVNESGLFRLNGHKNSVTQLQFTCSGRFLLSSSKDTYIKFWSMESQSCFFTIVDCHSEVYSFSLLKNDSLLLVGSAELELRVFDIHWLDKEDFEGEDNLKKAKVEDSEVGFADAQENNIVRCVKRGQLLRHSKGRCLQLAVSRDEKLVACVGSSYCVDIFRIYDENESQMRFKKKLSKARKKSAENGGIETVSESDVAKDVTLLISRIGEYVPTGKVKWVDFSPSVKQPKEGMRQYQLYILYATNTILSETILINCKSNEVQCMDLADLNQLGHRTDVRCLAVSECGSGFVSGSAEAAIVWNLHSLKIAHTLKDHDMADITASLFVTGDKHVVLGTKNGDIFLFELATNELLEIVKRAHEGTIWRVISTPDKIGFISCGSDKKVRYWTYKLMNEGTRKRLSFEPCRILEVPDEALCVAASNNSHFLAVGLLDNTAHVYFMDTLKFFVSLYGHSLPVIAIDISHDSKLVATGSADKSVKIWGLDFGDCHKSFHAHGDIVTCVLFSPDEHLVWSAGKDGLIKQWDADKFECVQVLDSHSAEIWALSQTINGKYLVSASHDKSIRIWELTEQIIVLGAEQEMKREKESDNLLTQLVDIVPGEEKNSEAELAVQKSIDSIKSMEDIVEALEIARSERIAVLEDTKHEKHPLLSYFKSASLDHFILDVINRVPSSHLEKSLLMVPFAFVPDIIKALGVCIGKHYKAELASRVILFLVKVHHNYLVTQNDLVLHLVELSHKVTQGLSELRNICGFNFAALKLFQKQVEEQSQVMLFTDVSRLGKSEIKSRKTKMKVFT
Length924
PositionTail
OrganismThelazia callipaeda (Oriental eyeworm) (Parasitic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Thelazioidea> Thelaziidae> Thelazia.
Aromaticity0.08
Grand average of hydropathy-0.107
Instability index26.96
Isoelectric point6.30
Molecular weight103414.31
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05297
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     436.98|      40|      41|     580|     619|       1
---------------------------------------------------------------------------
   62-  101 (29.38/13.48)	.....IVSTMKF.SGNRQ..FLAVGFVDGTLRLYD...........RknDDRST....yiTFC
  102-  143 (46.93/25.91)	GHR.TAVNCIAF.SKDSL..VLATGGKDSAVVTWD...........I..VNESG....lfRLN
  144-  186 (47.85/26.56)	GHK.NSVTQLQF.TCSGR..FLLSSSKDTYIKFWS...........M..ESQSC...fftIVD
  187-  216 (27.32/12.03)	CHS..EVYSFSL.LKNDS..LLLVGSAELELRVFD............................
  405-  445 (44.61/24.27)	GHR.TDVRCLAV.SECGS..GFVSGSAEAAI.VWN...........L..HSLKI....ahTLK
  446-  489 (27.90/12.44)	DHDmADITASLFvTGDKH..VVL.GTKNGDIFLFE...........L..ATNEL...leiVKR
  490-  541 (33.98/16.75)	AHE.GTIWRV.I.STPDKigFISCGS.DKKVRYWTyklmnegtrkrL..SFEPC.....rILE
  542-  582 (35.26/17.65)	V.P.DEALCVAA.SNNSH..FLAVGLLDNTAHVYF...........M..D....tlkffvSLY
  583-  624 (52.11/29.58)	GHS.LPVIAIDI.SHDSK..LVATGSADKSVKIWG...........L..DFGDC....hkSFH
  625-  666 (54.18/31.05)	AHG.DIVTCVLF.SPDEH..LVWSAGKDGLIKQWD...........A..DKFEC....vqVLD
  667-  698 (37.46/19.20)	SHS.AEIWALSQ.TINGK..YLVSASHDKSIRIWE...........L................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.66|      13|      15|     840|     854|       2
---------------------------------------------------------------------------
  840-  854 (18.93/15.98)	ILFLVKVHHNylVTQ
  858-  870 (22.73/11.89)	VLHLVELSHK..VTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.32|      15|      17|     737|     753|       4
---------------------------------------------------------------------------
  737-  753 (15.78/19.11)	AeLAVQKSiDSIKSMED
  757-  771 (23.53/15.05)	A.LEIARS.ERIAVLED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.61|      13|      26|     243|     255|       5
---------------------------------------------------------------------------
  243-  255 (22.77/15.96)	FADAQENNIVRCV
  271-  283 (20.85/13.97)	LAVSRDEKLVACV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05297 with Med16 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA