<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05297

Description Uncharacterized protein
SequenceMGLTKQYLRFSPNGICNVVASSNGTVAAITDNICAASACENVHFYNMKLGEKVDEIKGSDKIVSTMKFSGNRQFLAVGFVDGTLRLYDRKNDDRSTYITFCGHRTAVNCIAFSKDSLVLATGGKDSAVVTWDIVNESGLFRLNGHKNSVTQLQFTCSGRFLLSSSKDTYIKFWSMESQSCFFTIVDCHSEVYSFSLLKNDSLLLVGSAELELRVFDIHWLDKEDFEGEDNLKKAKVEDSEVGFADAQENNIVRCVKRGQLLRHSKGRCLQLAVSRDEKLVACVGSSYCVDIFRIYDENESQMRFKKKLSKARKKSAENGGIETVSESDVAKDVTLLISRIGEYVPTGKVKWVDFSPSVKQPKEGMRQYQLYILYATNTILSETILINCKSNEVQCMDLADLNQLGHRTDVRCLAVSECGSGFVSGSAEAAIVWNLHSLKIAHTLKDHDMADITASLFVTGDKHVVLGTKNGDIFLFELATNELLEIVKRAHEGTIWRVISTPDKIGFISCGSDKKVRYWTYKLMNEGTRKRLSFEPCRILEVPDEALCVAASNNSHFLAVGLLDNTAHVYFMDTLKFFVSLYGHSLPVIAIDISHDSKLVATGSADKSVKIWGLDFGDCHKSFHAHGDIVTCVLFSPDEHLVWSAGKDGLIKQWDADKFECVQVLDSHSAEIWALSQTINGKYLVSASHDKSIRIWELTEQIIVLGAEQEMKREKESDNLLTQLVDIVPGEEKNSEAELAVQKSIDSIKSMEDIVEALEIARSERIAVLEDTKHEKHPLLSYFKSASLDHFILDVINRVPSSHLEKSLLMVPFAFVPDIIKALGVCIGKHYKAELASRVILFLVKVHHNYLVTQNDLVLHLVELSHKVTQGLSELRNICGFNFAALKLFQKQVEEQSQVMLFTDVSRLGKSEIKSRKTKMKVFT
Length924
PositionTail
OrganismThelazia callipaeda (Oriental eyeworm) (Parasitic nematode)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Thelazioidea> Thelaziidae> Thelazia.
Aromaticity0.08
Grand average of hydropathy-0.107
Instability index26.96
Isoelectric point6.30
Molecular weight103414.31
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05297
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     436.98|      40|      41|     580|     619|       1
---------------------------------------------------------------------------
   62-  101 (29.38/13.48)	.....IVSTMKF.SGNRQ..FLAVGFVDGTLRLYD...........RknDDRST....yiTFC
  102-  143 (46.93/25.91)	GHR.TAVNCIAF.SKDSL..VLATGGKDSAVVTWD...........I..VNESG....lfRLN
  144-  186 (47.85/26.56)	GHK.NSVTQLQF.TCSGR..FLLSSSKDTYIKFWS...........M..ESQSC...fftIVD
  187-  216 (27.32/12.03)	CHS..EVYSFSL.LKNDS..LLLVGSAELELRVFD............................
  405-  445 (44.61/24.27)	GHR.TDVRCLAV.SECGS..GFVSGSAEAAI.VWN...........L..HSLKI....ahTLK
  446-  489 (27.90/12.44)	DHDmADITASLFvTGDKH..VVL.GTKNGDIFLFE...........L..ATNEL...leiVKR
  490-  541 (33.98/16.75)	AHE.GTIWRV.I.STPDKigFISCGS.DKKVRYWTyklmnegtrkrL..SFEPC.....rILE
  542-  582 (35.26/17.65)	V.P.DEALCVAA.SNNSH..FLAVGLLDNTAHVYF...........M..D....tlkffvSLY
  583-  624 (52.11/29.58)	GHS.LPVIAIDI.SHDSK..LVATGSADKSVKIWG...........L..DFGDC....hkSFH
  625-  666 (54.18/31.05)	AHG.DIVTCVLF.SPDEH..LVWSAGKDGLIKQWD...........A..DKFEC....vqVLD
  667-  698 (37.46/19.20)	SHS.AEIWALSQ.TINGK..YLVSASHDKSIRIWE...........L................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.66|      13|      15|     840|     854|       2
---------------------------------------------------------------------------
  840-  854 (18.93/15.98)	ILFLVKVHHNylVTQ
  858-  870 (22.73/11.89)	VLHLVELSHK..VTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.32|      15|      17|     737|     753|       4
---------------------------------------------------------------------------
  737-  753 (15.78/19.11)	AeLAVQKSiDSIKSMED
  757-  771 (23.53/15.05)	A.LEIARS.ERIAVLED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.61|      13|      26|     243|     255|       5
---------------------------------------------------------------------------
  243-  255 (22.77/15.96)	FADAQENNIVRCV
  271-  283 (20.85/13.97)	LAVSRDEKLVACV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05297 with Med16 domain of Kingdom Metazoa
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