Description | Mediator of RNA polymerase II transcription subunit 14 |
Sequence | MSDGSNFSDDSSSDGKEEFARFSSDKFTDNIKRNWSLEKEFSRNNNKHDEEFEEILSYLPSVPQSHNSGMIPFGSLLQFASHKISQELIVLSELIPKAYDQSKKISLVEFSFVAMNLFSKILAILKWYRYFKKYRLCTPIQYFLDQQSQIFRDTADALYTIAKVELRGARLPYFEMEAALNNIWQNFNCLPLAIKKRFIPDPPVSKIDQKIILSRLNHVLKNRLSLISTKIPIVITDITIRNGTVSLKVNGEYETVLTLLSSDVSEKWTLLHIKILVEQHDIGYGTTLVHPLQLHNVHQHLQKLMNESDNPINTLHDFMHKFCLSLQLDVIFCEATQLIQNQYNRKLIIEKYDMDGGKLIISYWPKYNGKKISPSQYKLIITHSKSTSFHGLRVYHMPYKSNMPQLDTNTGRLSLNTLIGTTTAIRAKEKLQILRKKLNKINPIAGTFISGELLQIIKFPLLDDTNISEDEYLYFTVNRFTGAYFCSFKYDDSDENINKLSETLNNNGHVNEIQRLINNIRVNFLMKKYKEIISLNYLIVSEAILPEKAREFLKDKEKDRICIKFHQDLPYYCIFFFTKHISNGISISQYIVFKNNNDEVLIFPFNDVIQESKEEDIESNINTKLLFRNSSNPPKISHLSSEIKNLILVMDMKVRHLRLTEDFKKKGIAVEPINHEKPNDPIKLKINFIPFLQPKDLEFLNNIKNLLVFCDNRAKLLWPFEFYIQNIPIIADFCKHTLLEDISTKHCGKRNFILSSRTSSSMACTSASLDIVSTNFIEKIAICTMIYKQVFHFSKYYYAYYRKFCNIKIFNFQKLIIAYGKNRDQLMFLTYKPSRKTYIMSFGVGSPKNFVNGVNDVYQSSNQTYINIHNSVSLYIHEMTRKEYFLRDVIHYLVNTTDALTYLYRSIKPKFISTEAFGQISRETIFHNQEFQFELFIVDEHSFRLSNGIFSLGIYVYDINFVYIKDCSYGEPSLIGLQNFLKVQTQNAASKSLNQMNSVERNTYFTTSRKVYRLSLSAFERLTALNTVDNNYSVIGKYLINLRSFDKLRIIFSQQKEKTISKGCNIRFSDFQRTSFYTKVTFQGATLPNGTIPCTIHFTVYLEPNTFDLKAKIEYEGSFKPSESEIKMAEKYFEKVLSNGNCPQGVYSFMNILRLTYPMSFANLTLLMELEMKPPSNHYYRLSLDLVSNDHRNSDQTVQYSPSFLIDEKSFRVLVPVSLRPQKRESKDSKCIDPDRLKLNAVWDIKNNRLNLHKPATDLMKFINDKITKHNEIAKENNDCVIESCIKILLIHQLKEPVVIT |
Length | 1301 |
Position | Tail |
Organism | Strongyloides papillosus (Intestinal threadworm) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Strongyloididae> Strongyloides. |
Aromaticity | 0.12 |
Grand average of hydropathy | -0.291 |
Instability index | 37.13 |
Isoelectric point | 9.03 |
Molecular weight | 151519.83 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU365082 |
GO - Cellular Component | mediator complex GO:0016592 IEA:UniProtKB-UniRule |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:UniProtKB-UniRule |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP05288 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.67| 17| 25| 816| 839| 1 --------------------------------------------------------------------------- 818- 839 (27.40/32.26) AYG....KNrdqlmFL.....TYKPSRKTYI 841- 866 (21.27/ 6.31) SFGvgspKN.....FVngvndVYQSSNQTYI --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 60.96| 18| 21| 691| 710| 2 --------------------------------------------------------------------------- 691- 710 (28.84/20.44) FLQPkdLEF.LNNIKNLLVFC 716- 734 (32.11/16.65) LLWP..FEFyIQNIPIIADFC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.17| 15| 23| 342| 363| 3 --------------------------------------------------------------------------- 342- 361 (20.90/32.48) QYN.RKLIIEKYdmdggKLII 366- 381 (23.27/ 9.43) KYNgKKISPSQY.....KLII --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 35.00| 10| 21| 783| 795| 4 --------------------------------------------------------------------------- 783- 795 (15.32/18.71) CTMiykQVFHFSK 805- 814 (19.68/11.72) CNI...KIFNFQK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 59.50| 20| 23| 1000| 1022| 5 --------------------------------------------------------------------------- 1000- 1022 (24.99/21.96) ErNTYFTTSRkvYRLSLSAFERL 1029- 1048 (34.51/18.55) D.NNYSVIGK..YLINLRSFDKL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 56.54| 20| 23| 416| 438| 6 --------------------------------------------------------------------------- 416- 438 (27.06/24.78) N...TLIGTTTairAKEKLQILRKKL 439- 461 (29.49/18.10) NkinPIAGTFI...SGELLQIIKFPL --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.31| 19| 26| 552| 577| 7 --------------------------------------------------------------------------- 524- 546 (27.25/ 8.60) FLMKKYKEIISLNYlivsEAILP 552- 570 (35.06/34.75) FLKDKEKDRICIKF....HQDLP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 179.10| 57| 549| 576| 687| 8 --------------------------------------------------------------------------- 27- 86 (92.75/39.56) FTDNIKRNWSLEKEFSRNNNkHDEEFeeILSYLPSVPQSHNSGM...IPFGSLLQFASH..KISQ 577- 638 (86.35/137.24) FTKHISNGISISQYIVFKNN.NDEVL..IFPFNDVIQESKEEDIesnINTKLLFRNSSNppKISH --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 41.97| 12| 266| 928| 944| 12 --------------------------------------------------------------------------- 928- 939 (21.12/23.57) NQEFQFELFIVD 947- 958 (20.85/ 6.17) NGIFSLGIYVYD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 48.61| 13| 28| 95| 107| 14 --------------------------------------------------------------------------- 95- 107 (22.79/12.68) IPKAYDQSKKISL 124- 136 (25.82/15.33) ILKWYRYFKKYRL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) DGKEEFARFSSDK 2) MSDGSNF | 14 1 | 26 7 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab