<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05268

Description Uncharacterized protein
SequenceMNPSNLQGHMPRQVGGQPSNDNQNYIRQNVPPGQNIHPQYYGQQYQHPQYPVQPQQHSYHQYGPGSQYGSQHPLQQQNLPQSSGYQSQSNMYQQQVPRYQDRPVLHQVPIRNEQQFQNTGHRGPGYNAPMIDRTFSGPQQLPPDPNRHLPLQQQERSHEGKMMPQNQGQRIANQGYDYVPENAFVSDPSRQLTRPHQLPPSMYYGSLGKPETKERQIIEGKRESLDNMTEEQKRKLNMNRSLQGKPTEYQPNTGYSNINPNLSNDIKNLQRIPGQMGLIHYSMLSQTGQSHHPLIRREDIDPEYEKAVKKLKENEKKIKILLERQQMDGKISDAKERIERLERIIQFKEKASLNFINRFINATDAKIRDENLCKPVIDAFDRIVRAGDKYKNFRIPHYDPFHCIKEKLGVPDYIKYTRPDDDTDPTPYYLRENKCDEVREKVIEKPEEKEKSIYASKINVGERELEILEEIDEKSKLVVGEDSKEHLVILCGNERYLVLSEIITKDLKSCDGKFKVDPENIPISDHCREINIIITFDTIGIPPLHLLVPIDYPKDFCTIINPNFNEVDRDVLLCRLISKVEQALPCLPNNRDIQNIVNTWKKLSMTCN
Length608
PositionTail
OrganismStrongyloides papillosus (Intestinal threadworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Strongyloididae> Strongyloides.
Aromaticity0.07
Grand average of hydropathy-0.984
Instability index49.44
Isoelectric point7.28
Molecular weight70684.96
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05268
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     261.07|      57|      57|      38|      94|       1
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   38-   94 (112.70/54.44)	PQYYGQQYQHPQYPV...QP..........QQHSYHQYGPGSQYGS.QHP....................LQQQNL..PQSSGYQSQSNMYQQ
   97-  152 (80.69/36.88)	PRYQDRPVLH.QVPIrneQQ..........FQNTGHR.GPG..YNA...P....................MIDRTFsgPQQLPPDPNRHLPLQ
  164-  250 (67.69/29.76)	PQNQGQRIANQGYDY...VPenafvsdpsrQLTRPHQLPPSMYYGSlGKPetkerqiiegkresldnmteEQKRKL..NMNRSLQGKPTEYQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.76|      75|     121|     267|     353|       2
---------------------------------------------------------------------------
  267-  319 (74.08/39.41)	...........................KNLqRIP.........GQMGLIHYSMLSQTGQSHHP...LIRREDIDPEYEKAVKKLKENEKKI...K
  328-  350 (13.75/12.78)	DGKISD...AKERIERLERIIQFKEK.....................................................................
  364-  457 (105.93/53.36)	DAKIRDenlCKPVIDAFDRIVRAGDKyKNF.RIPhydpfhcikEKLGVPDYIKYTRPDDDTDPtpyYLRENKCDEVREKVIEKPEEKEKSIyasK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.84|       9|      28|     522|     531|       4
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  522-  531 (14.99/12.53)	PiSDHCREIN
  553-  561 (18.85/10.55)	P.KDFCTIIN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05268 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNPSNLQGHMPRQVGGQPSNDNQNYIRQNVPPGQNIHPQYYGQQYQHPQYPVQPQQHSYHQYGPGSQYGSQHPLQQQNLPQSSGYQSQSNMYQQQVPRYQDRPVLHQVPIRNEQQFQNTGHRGPGYNAPMIDRTFSGPQQLPPDPNRHLPLQQQERSHEGKMMPQNQGQRIANQGYDYVPENAFVSDPSRQLTRPHQLPPSMYYGSLGKPETKERQIIEGKRESLDNMTEEQKRKLNMNRSLQGKPTEYQPNTGYSNINPNLSNDIK
1
267










Molecular Recognition Features






MoRF SequenceStartStop




1) NIHPQYYGQQYQHPQY
35
50