<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05259

Description Uncharacterized protein
SequenceMGVFNPDNPENEWIIELVTQTYRENLNPVEFGFLLQKELRTRRCSEQQLRLLATTLLRFATATDAPEKRLLICLVNLAKAESRLTITSKVQLAFQLISWARFIKVIYEFKQFTRFLCVEALADILRDSLPYLKIFFDRYCKLNMTYNHVNIFVSSCKSCTDNECEVLAKSFMDVLSWCLLALEQALQMGDERSITALARCACEYARNKFIRASLFLYERISRDSPSYIIEGAANFAKNYTDNIDIEILKGTVLLLQKSPVERVEERLTGMVKQPHPAVLTIVSVFESFRTTKRVDQMADAFFETAEILSLQYPQMFEDMLRGSLLIMVNKYLCITLPVLTLDVKESVSEEMVAFQSFFYLKLPQIIKNLLRRGVPQIDLLTALQNICACKALLNKSNTLSHFLEQLFAANVIDEGSTRALQEHRLKLMMESCPILYQNIMQSTVVSRPVILEAESAKIAVDKLMRQSNDGIINVLRKLACGNSGLFTFDSVCASFCADGNLTYFSSKLATINGQSERPIPNADRNEGYSRALAFNLSFILLTRIRFNYNDLRPSELVNGTTKTIDNTRSCFFKFASNYGWTAADCCGQRAPIASEVKNHYHERVNMLKHGQIFWDKRTVNYTELVDAVPIFGEILLDECSCKRPEEQEHFHEVIKKVLQAFCDDTNFMIVCLVQWMCSQPVTEARQNLVKSFIYALSYPPQLDEMQQERLDIHLVPTIYYFLCTVVMALTSAACRRTLEDLLTCDRLRDPRFTWIINCAKRKLPAVPFTMPAAASQSSDAEMLKQAFTYARQQGWASPSVLQLVDRCNKAGVVENWCMVWLSSMFKLVTNDEMVAAGELCFAAGVLAPVPCMINFARELTNYVLEQNIEFGCIEPKALVSASFLVHCLQLAFYSYWRLQKEKALRTDSEGSDVSDVGNPVEQSVEVIFSKFLRETRSGQLKSTIVFIYHFMVALASAPRNEPTKRIIELIPQELMYNLAQIDPRSFNLDLYLHLTDLGNETLARSALRFNCLLRKLGVTSQYHL
Length1024
PositionTail
OrganismSyphacia muris
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Oxyuridomorpha> Oxyuroidea> Oxyuridae> Syphacia.
Aromaticity0.10
Grand average of hydropathy0.010
Instability index52.26
Isoelectric point6.73
Molecular weight116904.31
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05259
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.63|      20|      45|     471|     513|       1
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  471-  495 (26.50/56.56)	IINVLRKlaCGNSGLFTFDsvcASF
  519-  538 (36.13/12.17)	IPNADRN..EGYSRALAFN...LSF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.25|      19|      47|     595|     615|       2
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  595-  615 (33.14/32.74)	EVKNHYHERVNmlKHGQIFWD
  645-  663 (35.11/26.33)	EEQEHFHEVIK..KVLQAFCD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     208.49|      55|     252|     673|     763|       3
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  307-  340 (41.19/11.26)	...ILSLQYPQMFEDMLRGSL.LI....MVNKYLCITLPVLT................
  355-  410 (77.82/31.23)	QSFFY.LKLPQIIKNLLRRGVpQIDLL.TALQNICACKALLNkSNTLSHFLEQLFAAN
  690-  745 (89.47/108.16)	KSFIYALSYPPQLDEMQQERL.DIHLVpTIYYFLCTVVMALT.SAACRRTLEDLLTCD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     265.66|      93|     890|      27|     145|       4
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   27-  145 (125.24/130.28)	NPVE..FGFLLQKELRTRRCSeqQLRLLATTLLRFatatdapekrllicLVNLAKAeSRLTITSKVqlaFQLISWarfiKVIYEFKQF.TRFLCVE...ALADILRDSLPYLKIFFDryC...KLNMT
  918- 1019 (140.43/86.06)	NPVEqsVEVIFSKFLRETRSG..QLKSTIVFIYHF..............MVALASA.PRNEPTKRI...IELIPQ....ELMYNLAQIdPRSFNLDlylHLTDLGNETLARSALRFN..CllrKLGVT
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.90|      58|     637|     174|     235|       6
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  174-  235 (83.45/56.53)	VLSWCLLALEQALQMGDERSITALARcACeYARNkfIRASLFLYERISRDSPSYIIEGAANF
  813-  870 (102.45/54.54)	VENWCMVWLSSMFKLVTNDEMVAAGE.LC.FAAG..VLAPVPCMINFARELTNYVLEQNIEF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05259 with Med24 domain of Kingdom Metazoa
Unable to open file!