<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05253

Description Uncharacterized protein
SequenceMSGPGSYGTPQNQRMYSHQTMQRNTSGGQLGSMMQHPGMMISSSQPQMMTQKCLRNNLHLFSNEVLQQPGIMVSQAGYSQTMVQQMPQMMATMGQQPHIGQPMNQAMMQQQQQQQQQPHIGQPQIGQPQIGQPQIGQPQIGQPQIGQSQIGQPQIGQPQSLVQATHMTVPMSQAQAQVVANASHMTSQQVYMSHPQRAVVQQAQSTVSTAPLYAQPRNSPHSVPAPLSQGPPSTGGPASNNPQTPMNPASQQHPTPATPQQAPSSVQSLPPQESVTVQAELPPDPICVARLLILKDLRHSIEKLSRATSEYFGSALGNPPSANPQSVNPQSVNPMSVNPMSVNPSSVKSDEPKSVEAPEKKAALTPKDVYNNALDEFLAVCDQIETNLLVFQEAQRQFKGFDKMLNGQVLTPNDLANVNYPAFAQSYIDLTTRLRNAIRSTVDNNNAVLQQLRAARVGLFVINLT
Length465
PositionTail
OrganismSyphacia muris
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Oxyuridomorpha> Oxyuroidea> Oxyuridae> Syphacia.
Aromaticity0.04
Grand average of hydropathy-0.563
Instability index65.13
Isoelectric point8.73
Molecular weight50497.53
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05253
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.95|      19|      19|     121|     139|       1
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  109-  128 (31.93/ 7.88)	QQQQQQQQQPHiGQPQIGQP
  129-  148 (36.01/ 9.82)	QIGQPQIGQPQiGQPQIGQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     290.28|      52|      55|     267|     318|       2
---------------------------------------------------------------------------
  158-  189 (40.02/11.03)	....PQ.SLVQATHMTV.PMSQAQAQV........VA....NASHMTSQQ.......
  195-  240 (57.63/18.50)	....PQRAVVQQAQ...STVSTAPLYAQpRNSPHSVP...aPLSQGPPSTGGPA.SN
  241-  266 (39.78/10.93)	N...PQTPMNPASQQHPTP..........................ATPQQAPSSV..
  267-  318 (82.20/28.91)	QSLPPQESVTVQAELPPDPICVARLLIL.KDLRHSIE....KLSRATSEYFGSALGN
  325-  376 (70.65/24.01)	QSVNPQ.SVN...PMSVNPMSVNPSSVK.SDEPKSVEapekKAALTPKDVYNNALDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     120.35|      29|      30|      24|      52|       3
---------------------------------------------------------------------------
    1-   19 (25.07/ 6.03)	..........MSGPGSYGTPQN.QRMYSHQ
   24-   52 (53.68/20.53)	NTSGGQLGSMMQHPGMMISSSQ.PQMMTQK
   56-   85 (41.60/14.40)	NNLHLFSNEVLQQPGIMVSQAGySQTMVQQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05253 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSRATSEYFGSALGNPPSANPQSVNPQSVNPMSVNPMSVNPSSVKSDEPKSVEAPEKKA
2) MSGPGSYGTPQNQRMYSHQTMQRNTSGGQLGSMMQHPGMMISSSQPQMMTQKCLRN
3) VQQMPQMMATMGQQPHIGQPMNQAMMQQQQQQQQQPHIGQPQIGQPQIGQPQIGQPQIGQPQIGQSQIGQPQIGQPQSLVQATHMTVPMSQAQAQVVANASHMTSQQVYMSHPQRAVVQQAQSTVSTAPLYAQPRNSPHSVPAPLSQGPPSTGGPASNNPQTPMNPASQQHPTPATPQQAPSSVQSLPPQESVTVQAEL
304
1
83
362
56
281










Molecular Recognition Features






MoRF SequenceStartStop




NANANA