<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05250

Description Uncharacterized protein
SequenceMVEGENEPAMTVSATAVGKDAERLQQMILNFVGFVLFDAVQMREIFWDIDADQGIGSVCYEALDLLKSMTDMKCSNCRKRIDEYVESGICFYLKFLHLIGFSECCEFLVTCTDFTLRHRIDAKKFEFMQEKLHLIDYKGLRSILKLLVVDRMQEMPTQISHYHRQMLLPLENILLTLIERQLNLLPCLFTITELQRMSTNSRAFLLPRVAKKFNELFISFRPLAEMVVVIGRPWLFPISTHISFVLVANSWKLEPGTTKIHQRAHLPYRSELFAPQSALLYTLLRQPRGKEALTWLMRPYSNAPRVQCDELLQMIILEAMSEMEKTDIRVDNPVNQYQWMNITHTVTYSLFHGFASFSRLLQILYESLTETVYRKGRAELMWIILQYVAVCLPQITTEDMQKIADIYNLLYKGEETFCGVDTDPLFFVRIFVPAAIWINFYTKDPGTTPKPSESLQSQIKFLKQMADADQNPALKNVADHNAVLAAVANAYSNDMETFTKLVLDNVESFLDCKADEREQLPYMVMCHGRRVPLSLILIDSLTIQSRYRLLQMLVTKLHTIIQMTPPVRYPSPAVVGFIIRTWLSFNVFFXXXXXXXXXXXXXXXTTDYEYAVKQLVGLVTCTLEQLNQINPGDLSGKADRAKDLLYILCEIFSYCLVNIPYPASNKSTILHTSYMALSSASVHVNGALYSAFEQVLLRFWMWNSPQEMYILNNQLIGKQGKLAYLVMSPDTFNEFQSGTYNDRVVNISPELIRCFLLSFFRCLKITGMPIHVIFRINKNFVWPLSTSQSFVAQIPNCTTDDGTDYAHMNEFCHCVMRDTRQIRDYLYSATGEEQIIKYFSENRNMDNLFCVIYLLLCEIKKCHPVFYSILKKMSARQIIIMTNKLAEYVIHTARFSLPDDASFRTMTNALNEMIFNYHLVSFERFLLSFVLHPTDDDSTQAALVIIHDLVGSYADLSTRLNFLFNVVPSNKLVSNNTVFFGKLVEYYAQYPELSYKEMEVKLRYGARLDVSMRRNDTCIDQSEHMPIYYGNLAERILPIVDVLLFRALEIGVADEIFDNLLSQFKCCYKYHPQPANFLYSVLYCLDKKLSHTLRAQKFVSEICSQVAERDGSNQLVVSIDQRLEPPELCMSLVDRILQGATYAHKPPSFACKDWRFAELPPAGQALTGACIELLASQHLPNVTVRALIEIAFVRPLRQPYAAINAITLILTSLPPSFQQKFFDHIVNVVACKELRDGDPSVCFESLESECFLLTESYLMTNLALCHAYMQHCTNYSLSVLPAFVQERLLPILETESQLIFVLRLVLPILQRFYDTKEKSKQLQDVSYYLLFWIMMNLLIYFLRGVNEIVGSFKYEDTVCDFLYHMKYMYVGDFIKNEAEQAIQKLSPSMREKLILSGGKKPNGHPFSQSMRIVRECSWYWGNISWQKAERLLLKQEPGTFLIRDSASDRYIFTLSYRTADSVLHTRLPRHGEYFCLGGLLLCPNTLVKANSLVTFVEESIRNCEKRGVCLLMHKKDVRTGTDMLALVKPLRRHEVLPSLNVPSVICSSQISIWTLRKFSTIYALSSGCLPSAIAVVRISGPDSKHCLQFLTGKKHFEPRKMFYTKLYTAEHEVIDRSMSVFLSGPNTYTGEDSVELFVHGSRALVHCLFQTLNQLKNVRPAKAGEFTKRAFLNSKMTFQDVTRLPYLISAQTGRQHSLATKGAEISSSVVSVRQKLVNTMAILEARIDFAEDIHFDFDDFIANVTTLTEELKCIKQRVMRGKLITSGLKAVIIGRTNAGKSSLFNRIAAKEIAIVSPQEGTTRDSLETAVEIAACPVIFTDTAGIRETSDLVERQGVLRTKNKVSEADLVIVVVDVTEVINPETYVRHLLLESEVKKDVPVVVVFNKVELLKEKPRYNLPWKNVFVSCLSGSGMDTLINLIGNVVDSLCGSIDTDAILSQERQRFLLETAISSLDIVSKANRTSDLAILSQTLRKAVDAVGEISGAIVNEEILDNIFANFCIGK
Length2004
PositionTail
OrganismSyphacia muris
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Oxyuridomorpha> Oxyuroidea> Oxyuridae> Syphacia.
Aromaticity0.10
Grand average of hydropathy0.038
Instability index43.18
Isoelectric point6.85
Molecular weight227046.22
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GTP binding	GO:0005525	IEA:UniProtKB-KW
GTPase activity	GO:0003924	IEA:InterPro

GO - Biological Process
tRNA modification	GO:0006400	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05250
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     346.62|     123|     141|    1694|    1832|       1
---------------------------------------------------------------------------
 1694- 1831 (163.52/168.65)	RQHSLATKG....AEISSSVVSVRQkLVNTMAILEaRIDFAEDIHFDFDDFIA.NVTTLTEE...LKCIKQRVMRGKLITSGLKAVI..IGRTnagKSSLFNRIAAKeiAIVSpQEgTTRDSLETAveIAACPVIftdtAGIRETSDL
 1834- 1966 (183.11/128.67)	RQGVLRTKNkvseADLVIVVVDVTE.VINPETYVR.HLLLESEVKKDVPVVVVfNKVELLKEkprYNLPWKNVFVSCLSGSGMDTLInlIGNV...VDSLCGSIDTD..AILS.QE.RQRFLLETA..ISSLDIV....SKANRTSDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.49|      27|     316|     755|     788|       2
---------------------------------------------------------------------------
  755-  788 (33.07/42.52)	FLLSFFRCL..KITgmpiHVIfRINKnFVWPLsTSQ
 1077- 1105 (45.42/26.63)	FLYSVLYCLdkKLS....HTL.RAQK.FVSEI.CSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.04|      31|     140|    1464|    1499|       3
---------------------------------------------------------------------------
 1464- 1499 (45.54/36.83)	HTRLPRHGEYFcLGGlllcPNTLVKANSLVTFVEES
 1611- 1641 (55.49/28.92)	HEVIDRSMSVF.LSG....PNTYTGEDSVELFVHGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     474.53|     152|     187|     203|     368|       4
---------------------------------------------------------------------------
  143-  202 (26.76/ 8.03)	.....................................................................................................................ILKLLVVDRMQEM.P.TQI.....................SHYHrqmllpLENILLTLierQLNLL....PCLFTITELQRMSTNSR
  203-  368 (246.20/234.90)	AFLLPRVA....KKFNELFISFRPLAEMVVVIGRPWLFPISTHISFVLVANSWKLEPGTTkihqrahlPYRSELFAPQSALLYTLL...RQPRGKEAL..TWLMRPYSNAPRvqcdeLLQMIILEAMSEMEK.TDIRVDN...............PvNQYQ......WMNITHTV...TYSLF....HGFASFSRLLQILYESL
  389-  557 (201.57/159.96)	AVCLPQITtedmQKIADIYNLLYKGEETFCGVDTDPLFFVRIFVPAAIWINFYTKDPGTT........PKPSESLQSQIKFLKQMAdadQNPALKNVAdhNAVLAAVANAYS...............NDMETfTKLVLDNvesfldckadereqlP...YM......VMCHGRRV...PLSLIlidsLTIQSRYRLLQMLVTKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.52|      33|     315|     896|     931|       5
---------------------------------------------------------------------------
  898-  930 (57.11/44.08)	PDDASFRTMTNALNEMIFNY.HLVSFERFLLSFV
  934-  967 (49.41/25.81)	TDDDSTQAALVIIHDLVGSYaDLSTRLNFLFNVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     155.80|      50|     147|    1358|    1417|       9
---------------------------------------------------------------------------
 1358- 1417 (74.67/72.01)	VCdFLYHMKYMYVG.DFIkneaeqAIQKlsPsMREKLILSGGKKPNGHPFSQ.SMRIVRECS
 1508- 1559 (81.12/50.33)	VC.LLMHKKDVRTGtDML......ALVK..P.LRRHEVLPSLNVPSVICSSQiSIWTLRKFS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.01|      17|     338|     802|     820|      10
---------------------------------------------------------------------------
  802-  820 (31.36/24.42)	GTDYAHMNEFCHCvmRDTR
 1139- 1155 (35.64/21.00)	GATYAHKPPSFAC..KDWR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.90|      36|    1006|      18|      60|      11
---------------------------------------------------------------------------
   18-   60 (55.52/56.05)	GKDAERlqqmILNFVGFVLFDAVQM...REIFwdiDADQGIGSVCY
 1030- 1068 (60.38/39.65)	GNLAER....ILPIVDVLLFRALEIgvaDEIF...DNLLSQFKCCY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.89|      21|      60|    1585|    1605|      12
---------------------------------------------------------------------------
 1585- 1605 (42.07/28.74)	HCL.QFLTGKKHFEPRKM.FYTK
 1646- 1668 (29.83/18.12)	HCLfQTLNQLKNVRPAKAgEFTK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05250 with Med23 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA