<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05249

Description Uncharacterized protein
SequenceMYGSNEPSTSRSYGTPMYVASPVQRSSRRTGVDIALESGLEWRVFKIENSGQEIYFRPPDYSERVAKLARRVDWRKLVGADATFDNPGMCERNLDEDEYSDTESVVPAELGIEDRQPPDAGPWHTVARNLFEALQQINLLTDTLKVLKLPYLEALTVADTFEMQHNMQEVVQHSKHFQWVTKRKALSEAANVLEQSQKSRSKVSAAKTEKEMFFEELKKVRENWRVRKTGDFVYGDIGYSIFGNKYDPKEMFDILRRPRYSVKDEQESSNQSCLQVRIPADLVRRSTLAVSIESDDINANKDLFAPPENDLDYARIDLEKAKEIHWEKALQWGQETLICRDIFRKLCNDAVILKGRLAVVRENVLIVSLFDDLLLRIELRNYVFEDGELPVVGDLYLNRSLRQLFVLDQCTRWLRHQSFVTMPLTQLHESLDLRGPDAMPKNEVESRLGKRKDLLVRFIDLASHYVLQDRAALALEQFILRVNDPQVTWKWLRSTPFQSSIVLTAVNRNYDHPGKFTFYIRIDADSFYIITKEGQRMNCWRDENMLINTVEVLICNFMLNSVAHVATKLWQWQILHANLNAIDGEANPRPTLYMCNQSATRSLFIEFRPKDVPIIRVRKCKPEKLERIESPEEFIKLNFSRLIGSSLCRKIDNLCSMLDN
Length660
PositionHead
OrganismSyphacia muris
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Oxyuridomorpha> Oxyuroidea> Oxyuridae> Syphacia.
Aromaticity0.09
Grand average of hydropathy-0.434
Instability index53.07
Isoelectric point6.34
Molecular weight76646.68
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05249
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.16|      32|      78|     404|     435|       1
---------------------------------------------------------------------------
  404-  435 (60.36/46.93)	LFVLD.QCT.RWLRHQSF.VTMPLTQLHESLDLRG
  480-  514 (45.80/33.71)	LRVNDpQVTwKWLRSTPFqSSIVLTAVNRNYDHPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.76|      25|      35|      29|      63|       3
---------------------------------------------------------------------------
   35-   63 (36.13/43.17)	ALESGLEWRvfKIenSGQEIYFRPP..........DYSE
   67-  101 (35.63/12.92)	KLARRVDWR..KL..VGADATFDNPgmcernldedEYSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.39|      15|      76|     274|     297|       4
---------------------------------------------------------------------------
  253-  267 (26.02/19.31)	DILRRPRYSVKDEQE
  281-  295 (23.37/ 9.66)	DLVRRSTLAVSIESD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05249 with Med17 domain of Kingdom Metazoa
Unable to open file!