<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05241

Description Uncharacterized protein
SequenceMKKGDKNERLLLNEIDNNGADRKLIDQSIFTANQIQSIVNEIENYTNGITVYEELYKKHIRINTSYKDEIDGSQYIKIKDLSKIISPEHADFFKNMKNIKLRKDFRSYHVWPLEYKLINTPLIEDFCKKQLNIKKYDEGFKICFHDIKNSGQLTSSNSSNEIVILSLMDKMKTFSMLHKEVARFSHYYYNYYNKYCNIKLYSYHKLIIAYGKERDQLMFLTYKPSKDSFLLSFGQDLKRTFVCGDEIEYKPSKNPSLWNAHNFVSSFLTDKCNKEYFLTDLVSYLIETNQPLQLLYSVIKEKVNCLSGFSQILVGENVYSEEFDLQIIANNERSFKIICAHMIMELFLSNDNYIYIKDCSKDEPKLYGLKKLFSSKETSNTQKVMDRDKDNEVRIEKGARSLPPVNITEAEETFKNPLSVPSSINISLNEQNTSMTTEDITGMSEENRKEYFSASRNIIRITHNDLETLLYHDTTSTSVSKLQNYLYSLRTFERLTTILVHNYGKPIPGAGGLTVHYVNISHLMVKISFASVKQLDGRIPCDINFTLYIEPYTFKIRLNLEYVGVLKPSNEEIKVAEEYFEDVLCYTDSPQKVYSFMNLIRMIFPKSFSCFTNLMILERNPDPSHFYRMNFDFVNVTKKLDDQMRKYTPKILVNEHSDRLLIPIFILPQKNESKKSDLCNRINLDFVWDAAKNEVYIHNISNEFMKMINQKVIQYNNTIKDSLECTIEACIRYILNSEINP
Length741
PositionTail
OrganismParastrongyloides trichosuri (Possum-specific nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Strongyloididae> Parastrongyloides.
Aromaticity0.11
Grand average of hydropathy-0.439
Instability index40.59
Isoelectric point7.22
Molecular weight86831.49
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05241
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.01|      30|      31|     395|     424|       1
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  395-  424 (49.60/27.93)	IEKGARSLPPVNITE.AEETFKNPLSVPSSI
  428-  458 (45.41/25.05)	LNEQNTSMTTEDITGmSEENRKEYFSASRNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.07|      18|      31|      83|     100|       2
---------------------------------------------------------------------------
   83-  100 (33.69/18.54)	KII.SPEHADFFKNMKNIK
  116-  134 (28.39/14.67)	KLInTPLIEDFCKKQLNIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      27.36|       9|      31|     460|     473|       3
---------------------------------------------------------------------------
  460-  473 (11.10/19.52)	RIThndleTLLYHD
  494-  502 (16.26/ 8.94)	RLT.....TILVHN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.15|      20|      30|     211|     230|       4
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  211-  230 (36.72/22.10)	GKERDQLMF....LTYKPSKDSFL
  234-  257 (28.43/15.48)	GQDLKRTFVcgdeIEYKPSKNPSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05241 with Med14 domain of Kingdom Metazoa
Unable to open file!