<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05214

Description Uncharacterized protein
SequenceMNFENNQANLPQRYVMQNVSSRMPGMSQQPQQINVPPNQQRPQGQIMSNQSQMVGQPVMSNNGQRQNIQMAPQNYYMQMQQNEQIQLGNQERRQVPVSYERTQGMIRSRMGANSTSQMLQQQQQQQMRMRQGMNSGINQPHILYVPQGPGSVPTQMTNNPQTGNIQQIQRIPSTHLSGSPMPMSHSVPPQQTNYSSNAQNNLNPSPPRGPVANVMYNNANTSGPSPQFNSALQAELRGVPNMQGYPQQHKLPPQAVITNPGQVSSHPNVQQLQQQQPHIDPDRDTPEYTNCLNYIKQYDRQLQTLVERLRMDGGNEQLLNNIEKIQAIIDGKKVVTLQFLGKLKKTVEGLIEKFDICKNMYKSSSMVLEEANQYKSITIPHYDLFHDLKSVLTKLPDEVLNIQPDNDPTPYYLREKKKNDASKIEVDINKEDEIIDDNLKFTYDENGDLRLIITCNNGRTLVLSNKASKELKKLKKFKLHNDMQPISDHTTDIAFEIFSKTPGIPPFILNVPINYPESPCSIHVSNEIKYDDNQFIYQCYQNLILKVSQNDSSISIRKYYKLWEEVCERCLTTSWGRVR
Length579
PositionTail
OrganismParastrongyloides trichosuri (Possum-specific nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Tylenchina> Panagrolaimomorpha> Strongyloidoidea> Strongyloididae> Parastrongyloides.
Aromaticity0.06
Grand average of hydropathy-0.837
Instability index56.91
Isoelectric point8.71
Molecular weight66301.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05214
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     363.37|      55|      58|     126|     180|       1
---------------------------------------------------------------------------
    5-   50 (67.39/23.67)	.........N.NQANLPQ.RYVMQNVSSRMPGMSQQP..QQ.INVPPNQQRPQGQIMSNQ
   52-  104 (71.58/25.55)	QMVGQPVMsN.NGQRQ.NIQMAPQ...NYYMQMQQNEqiQL.GN.QERRQVPVSYERTQG
  126-  180 (101.27/38.87)	QMRMRQGM.N.SGINQPHILYVPQGPGSVPTQMTNNP..QT.GNIQQIQRIPSTHLSGSP
  191-  232 (59.22/20.01)	QTNYSSNA.Q.NNLN.PS...PPRGP..VANVMYNNA..NTsG........PSPQFNSAL
  233-  275 (63.91/22.11)	QAELRGVP.NmQGYPQQHKL.PPQAVITNPGQVSSHP......NVQQLQQ.........Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.11|      10|     122|     279|     288|       2
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  279-  288 (21.88/ 9.76)	IDPDRD.TPEY
  402-  412 (18.22/ 7.12)	IQPDNDpTPYY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.96|      15|      16|     299|     313|       3
---------------------------------------------------------------------------
  299-  313 (25.62/18.10)	DRQLQTLVERLR..MDG
  315-  331 (20.34/12.83)	NEQLLNNIEKIQaiIDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.62|      12|      26|     351|     363|       5
---------------------------------------------------------------------------
  351-  363 (17.67/18.95)	IEKFDICKNMyKS
  379-  390 (22.95/17.11)	IPHYDLFHDL.KS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05214 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNFENNQANLPQRYVMQNVSSRMPGMSQQPQQINVPPNQQRPQGQIMSNQSQMVGQPVMSNNGQRQNIQMAPQNYYMQMQQNEQIQLGNQERRQVPVSYERTQGMIRSRMGANSTSQMLQQQQQQQMRMRQGMNSGINQPHILYVPQGPGSVPTQMTNNPQTGNIQQIQRIPSTHLSGSPMPMSHSVPPQQTNYSSNAQNNLNPSPPRGPVANVMYNNANTSGPSPQFNSALQAELRGVPNMQGYPQQHKLPPQAVITNPGQVSSHPNVQQLQQQQPHIDPDRDTPEYTN
1
290










Molecular Recognition Features






MoRF SequenceStartStop




NANANA