<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05208

Description Uncharacterized protein
SequenceLCSTLGDPSRPFPTEPEFRASALAAPRTNPPVVPPAFSLLRQQHAASSGMGRVSSPMAGMPQMPVQGKVWSPRTGYQQASPSPRGRGGVQWSGRGGGPGGVSPFQKRPSQIGENSPRMVSPTVNINFVSPPPRMNPPPINKVEQMSSDSSSSSSSEDESPK
Length161
PositionMiddle
OrganismNippostrongylus brasiliensis (Rat hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Heligmonellidae> Nippostrongylinae> Nippostrongylus.
Aromaticity0.05
Grand average of hydropathy-0.704
Instability index94.35
Isoelectric point10.80
Molecular weight16947.84
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05208
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     203.54|      45|      45|       9|      53|       1
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    4-   48 (75.47/24.07)	TLGDP.......SRPFPTEPEFRASA.L......AAPRTN.PPVVP.PAFSLLRQQHAASS
   49-   96 (68.68/21.30)	GMGRV.......SSPMAGMPQMPVQGkV......WSPRTGyQQASPsPRGRGGVQWSGRGG
   97-  150 (59.40/17.52)	GPGGVspfqkrpSQIGENSPRMVSPT.VninfvsPPPRMN.PPPIN.K....VEQMSSDSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05208 with Med4 domain of Kingdom Metazoa
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