<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05198
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MPGTPGNIVEGPLTWRALTNKSLPKTSAPGHEDDISLPEPIPYINVAAEKDAIRAAPHVVRHWEHLSLGPIDQPKDVLYLAVVPDNNDFCSLAVRYMEQLNQMYERMRFGRHIAMPTGVDNRDGLVRVGSRTQTGKYPSETTTLDFLNLVGRYVDNKSFMTKLRLFTQQMEENVHQLISERDDVFERATYREILALDWRAKRAAAAAVALAVEQRMAESSAEQGTSVPTPEPPPAEPPLEPEDIPIDEPGTLPHVIVVYVVRFIKFNPFTWGTEFRSALFTRVATLAVMRAFNTVCLRLPPNRRPQLQLEIIPMEQVADLLGYLPDYTNDSGVTQCLFENSGGSEREQIECVAVESLRNTVLSVYTQPRVLTADCIKSVQARCMTKFGPGSSLLDSLDEWERSGTTVFYKVPSNAYHLAPPPLLYQKSENGRVIQTCPDEQVLYVTYCVTGSDWLCVAVTDSLGRLNDNCLINLRTRQDHHIYKYRQQTQILDAMGRLWTYILGVLSMETRNWRLVIGRLGRIGHGEFKAWTYLLNKTALKRHSARLKEVCTACAQMPGCTGTPSILSACLVSTEPEPYLRMFPGFTSSDAYSKKARSSLPEDTNVTHIMVFPTSADIQLGSADQHAVGEDDWDFSDMDIPQDGNDLGDDFLSSICMDNLGPPQPSSSFRNAGNSFFSDNTADVSMENQPLATGFYVSTAPAADVPDWFWASCPGAKNRTPVHLKSSLHINVPLVHQGDEFLQGKAATGDKQEKESAHPLDSTRTDEVLRHVLETYNALSWLNIDVVSGERRSCLPVHMQALTRLYHSVAKLIM |
Length | 814 |
Position | Middle |
Organism | Nippostrongylus brasiliensis (Rat hookworm) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida>
Trichostrongyloidea> Heligmonellidae> Nippostrongylinae> Nippostrongylus.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.305 |
Instability index | 44.72 |
Isoelectric point | 5.52 |
Molecular weight | 90911.09 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP05198
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.30| 18| 31| 461| 491| 1
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461- 478 (32.41/32.98) DSLGRLNDNCL..INLRTRQ
493- 512 (28.89/ 7.30) DAMGRLWTYILgvLSMETRN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 116.70| 35| 38| 35| 69| 2
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35- 69 (61.11/42.65) ISLPEPIPYINVAAEKD.....AIRAAPHVVRHWEHLSLG
71- 110 (55.59/38.13) IDQPKDVLYLAVVPDNNdfcslAVRYMEQLNQMYERMRFG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 92.68| 30| 37| 306| 337| 3
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306- 337 (46.58/38.57) QLQLEIIPMEQVADLLgyLPDYTNDSGVT.QCL
346- 376 (46.09/30.28) REQIECVAVESLRNTV..LSVYTQPRVLTaDCI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 115.94| 34| 182| 224| 260| 4
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224- 260 (61.44/37.61) GTSV....PTPEPPPAEPPLEPEDipiDEPG....TLPHVIVVYV
404- 445 (54.50/26.54) GTTVfykvPSNAYHLAPPPLLYQK...SENGrviqTCPDEQVLYV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 50.35| 15| 33| 119| 133| 5
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119- 133 (25.56/20.33) VDNRDGLVRVGSRTQ
154- 168 (24.80/19.48) VDNKSFMTKLRLFTQ
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