<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05190

Description Uncharacterized protein
SequenceMMSAAAGQPTEAQDDKEKSLVVREGDGAPERPLDIERLRRCIIEFVKEKNVLLTELVTIVHESSLQWRQDYERVVDSILYYAHAAGRLAHRLSELIMYFRAVAELSYVIGRCFLFPLPAHPSFAASAASCRIDHLTTQISHRAPYLPYKAELKAPQTYLLYTVIRQPRGKEVLSGLLRQVSHGRTQWDEILSVLISETMAEVQKLPEDVEIPRYQWENLMSIIMYGITQKHINLSRLLSLLSNVLVKTGYRRARDEVMWIMLQIAGTFQQHLQKEQVEEMARLYNLLFNDDVVWTGASDHPSQLVRFLAAACMWNILDGSEGLPPPSECLANQIEFVRSNTGPPDEAMQAVLDNAFRHESPISRNVHAIFQQRLDGQPTDEPHLLPYGRPANNKLDAFDMQFLDALTLRAKINLLLSTCFVSLHKVDRLPSPACVETCARILTSIEFDYGLTNFITILNRSITAALTPPPQDSLSLKDQCYMLLDLLCYRLPSIPMNFRASISHAHDPSPAGLRLCMTIHSAMAQPQIASNYGLYSAMEHTLMRQWAWNLLPDTISLAHLFVDNAFGNTLLNLNSWLVSNPMDNTRAGRLVVCPEIVRMLLITMMRAMKIMGIESDPELMRINQVYTWAPSQLSSLPLTAQRTAITPEEDIARAEAFQREVHTDFTQMRGQPEMSWMEYMSMPSRQPTILCVIFRHLIDSLPEHSMLAPVVYQILDRLTCREYVLAALLNCSEINERIDFYCRYIPKRDVDAPEHFRRLSEYHRKFPEMTFSEMANRPPMMAEMINPRAHYPIYYGSLIERLLPILDFTLARALELQVDNIFSTILTTCGPIYKFHPYPITFLYTILFCMHEQVGHHPRARQFVLAILCQAPDWRFAEYPPAAQALYLACIELLASPHTPEHIVPAMINLLVSSRAQPPRPYLMLNAIALLLTALPEAYCRVLQNEFLAVIDSGVLASMTFEEIVFDEFEERQLLQMASRPLIVNVVAQAYWYHSNLTSLSKLISTFAGEVCSRANTENDLWYALRLVVPLLQRCYDWREKVKHEESLKVVSVLYTKIGDITERYGDIVHGDELCDLLYYFKYMFVGDFLRKEAEAAFPRFPPRMRERLKFYTSFSSNKEKDEECAAKMSSVSRPDLGKLLKARSSERAGATDTSGSSDH
Length1160
PositionTail
OrganismNippostrongylus brasiliensis (Rat hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Heligmonellidae> Nippostrongylinae> Nippostrongylus.
Aromaticity0.09
Grand average of hydropathy-0.094
Instability index49.71
Isoelectric point6.03
Molecular weight132686.92
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05190
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     403.40|     117|     137|     664|     789|       1
---------------------------------------------------------------------------
  664-  777 (166.00/138.17)	.............................DFTQMRGqpemswMEyMSMPSRQPTIL..C.VIFR.HLIDSLPEHSMLAPVVYQILDRLTCREYVLAALlnCSEINERIDF.........Y.....CR.....YIPKRD..VDAPEHFRRLSEYHRKFPEMTFSEMANR
  778-  915 (173.06/117.52)	PPMMAEMINPRAhypiyygslierllpilDFTLARA......LE.LQVDNIFSTILttCgPIYKfHPYPITFLYTILFCMHEQVGHHPRARQFVLAIL..CQAPDWRFAE.........YppaaqAL.....YLACIE..LLASPH....TPEH.IVPAMINLLVSSR
  918-  980 (64.34/38.22)	PPRPYLMLNAIA..................................................................................................llltalpeaY.....CRvlqneFLAVIDsgVLASMTFEEI..VFDEFEERQLLQMASR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.87|      12|      75|     430|     441|       3
---------------------------------------------------------------------------
  430-  441 (24.67/14.16)	PSPACVETCARI
  508-  519 (24.20/13.75)	PSPAGLRLCMTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.05|      28|      42|     167|     196|       4
---------------------------------------------------------------------------
  167-  196 (44.34/34.46)	PRGKevLSGLLRQVSHGRTQWDEILSVLIS
  212-  239 (51.71/34.01)	PRYQ..WENLMSIIMYGITQKHINLSRLLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.29|      20|     368|       7|      34|       6
---------------------------------------------------------------------------
    7-   34 (26.05/35.04)	GQPTEaqddkEKSLVVRegdGAP.ERPLD
  376-  396 (36.24/22.05)	GQPTD.....EPHLLPY...GRPaNNKLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.69|      45|     397|      43|     101|       8
---------------------------------------------------------------------------
   43-  101 (63.22/63.54)	IEFvkekNVLLTELVTIVHES...........SLQWRQDYERVVDsILYYahaagrlahRLSELIMYFRA
  445-  500 (75.47/43.55)	IEF....DYGLTNFITILNRSitaaltpppqdSLSLKDQCYMLLD.LLCY.........RLPSIPMNFRA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05190 with Med23 domain of Kingdom Metazoa
Unable to open file!