<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05187

Description Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein)
SequenceMPSCEDDVIAIGRKLDKIIEGTKPADNAGDLLEALAKLPITIDVLTKTRIGMTINDLRKKTSDEKLAKKAKNLIKEWKNLVDKREDKKEKAPKSEPSSSNSSKSNGSNQAAKAPSTPAPTPAPSQHYSSNFPPKHLENDEVRMKSAQLILNALRYAELPVGTLDPEDIAVKVEEKLYTVHKGTGDKYKAALRSRVFNLRDKKNPALRENVLTGVVKPEKFAIMTSEEMASDEVREMRDKFNKAAILEHQMSVQQGEDDFLQFFLFFVLSHEW
Length272
PositionUnknown
OrganismNippostrongylus brasiliensis (Rat hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Heligmonellidae> Nippostrongylinae> Nippostrongylus.
Aromaticity0.06
Grand average of hydropathy-0.662
Instability index42.63
Isoelectric point8.68
Molecular weight30502.52
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05187
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.28|      16|      19|      90|     108|       1
---------------------------------------------------------------------------
   90-  105 (28.08/23.03)	KAPKSE...PSSSNSSKSN
  112-  130 (26.20/11.54)	KAPSTPaptPAPSQHYSSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.81|      11|      18|     161|     171|       3
---------------------------------------------------------------------------
  161-  171 (18.81/12.45)	GTLDPEDIAVK
  182-  192 (19.00/12.63)	GTGDKYKAALR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05187 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KNLVDKREDKKEKAPKSEPSSSNSSKSNGSNQAAKAPSTPAPTPAPSQHYSSNFPPKHLENDEVRM
78
143










Molecular Recognition Features






MoRF SequenceStartStop




NANANA