<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05184

Description Actin-interacting protein 1 (inferred by orthology to a D. melanogaster protein)
SequenceMNAGDSNEYTNIRVFASLPRTTRGFPTVLGSTPNGDKIIYCNGNSVFIVDVENVTDVDIYTEHSVQTTVAKMSPSGFYIASGDCAGNVRIWDTTQSTHILKAAYQVFSGSVRDIAWNDDSKRIAAVGEGRERFGHVFLFDTGTSNGNLSGQSRPMSTIDFRPARPYRLVSGSEDNTVALFEGPPFKFKTTFHEHSRFVHVTRYNKDGSVFASAGVDGNKIGELTDPSLKGETAHSGSVFGLAWSPCGNRIATASGDKTVKIWNVSEKSLEKTVNFGDTIDDQQIGICWSAKALVSVSLAGFLSFLGNDGELVKVVEGHNKGITTVALSPCKNWLFTADFEGHLTRWEVATGASKRIQPALHKSQVVGLSCGIDGHLITCAWDDTVRFARSVAESADVEVSSSVKLPSQPVALAVAEENGLAIVACCKNVLVFVGDKLSTDLPLSYNPSCVAVSGRLVAIGGQDSKVHIYDLSGTTLAEQTTLSHSSPITSVAFSFNGKYLAATDSGRKVVPYAVEDGFKTVAEKEWTFHTAKVNCVAWSPDNRHLASGGLDTSIIVWDIQRSGEHPIIIRGAHAMAPVNDLVFLSDNEILSVGQDANVKHWKFVPQ
Length606
PositionTail
OrganismNippostrongylus brasiliensis (Rat hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Heligmonellidae> Nippostrongylinae> Nippostrongylus.
Aromaticity0.09
Grand average of hydropathy-0.104
Instability index30.25
Isoelectric point5.99
Molecular weight65277.54
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05184
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     224.91|      42|      42|     443|     484|       1
---------------------------------------------------------------------------
   75-   97 (24.23/ 9.78)	...........S..GFYIASGDCAGNVRIWDTT.Q.ST.........
  207-  234 (32.67/15.76)	..............GSVFASAGVDGN.KIGELT.D.P..SLKGETAH
  241-  269 (40.25/21.13)	LAWSP..C......GNRIATASGDKTVKIWNVS.E.KSL........
  443-  484 (69.49/41.87)	LSYNP.SCVAVS..GRLVAIGGQDSKVHIYDLS.G.TTLAEQTTLSH
  486-  529 (37.84/19.43)	...SPiTSVAFSfnGKYLAATDSGRKVVPYAVEdGfKTVAEKEWTFH
  534-  559 (20.43/ 7.08)	......NCVAWSpdNRHLASGGLDTSIIVWDI...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.43|      20|      40|     325|     352|       2
---------------------------------------------------------------------------
  325-  352 (28.18/36.80)	VALSpCknwlftaDFEGHLTR..WE........VATGA
  366-  395 (27.25/14.23)	VGLS.C.......GIDGHLITcaWDdtvrfarsVAESA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.31|      33|      40|     108|     142|       3
---------------------------------------------------------------------------
  108-  142 (50.05/38.78)	SGSVRDIAWND.DSKRIAAVGEGRERfGHVFLFDtG
  149-  182 (54.26/32.56)	SGQSRPMSTIDfRPARPYRLVSGSED.NTVALFE.G
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05184 with Med16 domain of Kingdom Metazoa
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