<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05181

Description Uncharacterized protein
SequenceMNSDPELVDNIFNFSPPSYVAPDWRFAEYPPAAQALYLACIELLASPHTPEHIVPAMINLLVSSRAQPPRPYLMLNAIALLLTALPEAYCRVLQNEFLAVIDSGVLASMTFEEIVFDEFEERQLLQMASRPLIVNVVAQAYWYHSNLTSLSKLISTFAGEVCSRANTENDLWYALRLVVPLLQRCYDWREKVKHEESLKVVSVLYTKIGDITERYGDIVHGDELCDLLYYFKYMFVGDFLRKEAEAAFPRFPPRMRERLKFYTSFSSNKEKDEECAAKMSSVSRPDLGKLLKARSSERAGTTDTSELGFCGHRVCRVEIAIEDVEFYWRRPAVNVKVQKLNEGVWRTNQDQVSSFKIEPSKHDRTNPLAKWLSELKACPWYWGDLSWRNAEKLLLLCEDGSFLVRDSHSDNHLFTVSYKHLDRVFHSRVEICGQFAHL
Length438
PositionTail
OrganismNippostrongylus brasiliensis (Rat hookworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Heligmonellidae> Nippostrongylinae> Nippostrongylus.
Aromaticity0.11
Grand average of hydropathy-0.217
Instability index48.13
Isoelectric point5.90
Molecular weight50487.20
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05181
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.70|      32|      43|     110|     142|       1
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  110-  142 (50.46/36.87)	TFEEIVFDEFEERQLLQMASRpLIVNVVAQAY.W
  156-  188 (55.24/35.17)	TFAGEVCSRANTENDLWYALR.LVVPLLQRCYdW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.56|      25|     215|       6|      31|       2
---------------------------------------------------------------------------
    6-   31 (45.24/27.47)	ELVDNIFNFSpPSYVAPDWR......FAEYPP
  223-  253 (44.33/22.39)	ELCDLLYYFK.YMFVGDFLRkeaeaaFPRFPP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05181 with Med23 domain of Kingdom Metazoa
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