<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05164
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | LQMRFEIHEKLSGEGFYQRSVLFLRERCELFGWLKCMHSAPGNIVEGPLTWRALTSKSLPKSSAPTHDDDISLPEPIPYINVAAEKDAIRAAPHVVRHWEHLSLGPIDQPKDVLYLVVVPDNPDICNLAVKYLEQLSQMYERMRLGRHIAMPTGVDSRDGCVRVGCRTQTGKYPTETTTLDFLNLVGRYVDNKAFMTKLRLFTQQMEENVLQLLSERDDIFERATYRETLALDWRAKRAAAAAVALAVEQRMAENSAEQGASVAAPEQPPAEPPLEPEDIPVDEPGTLPHVIVIYVLNPFTWGTEFRSALFTRVATLAVMRAFNTVCLRLPANRRPQLQLEIIPMEQVTDLLGCLPDYTNDNGSSQSMFENSGGSEREQVECVAVESLRNTVLSVYTQPRVLTADCIKSVQARCMTKFGPGSSLLDSLDEWERSGTTVFYKVPSNAYHLAPPPLLYQKHENGRIIQSSPEEQVLYVTYCVIGSDWLCVAVTDSLGRLNDNCLINLRTRHDHHIYKYRQQTQILDAMGRLWTYILGVLSMETRNWRLVIGRLGRIGHGEFKAWTYLLNKTALKRHSARLREVCTACAQMPGCTGTPSILSACLVSTEPEPYLRMFPGFSLNDAYSKKTRSTLPDDTNVTHIMVFPTSADIQLGSADQHAVGEDDWDFSDMDIPQDGNDLGDDFLSSICMDNLGPPQPSASFRNAGNSFFSENTADVSMENQPLATGFYISTAPAADVPDWFWASCPGAKNRTPVHLKSSLHINVPLVHQGDEFLQGKATTGDKQEKESAHPLDSTRTDEVLRHVLETYNALSWLNIDVVSGERRSCLPIHMQALTRLYHSVARLIM |
Length | 845 |
Position | Middle |
Organism | Haemonchus placei (Barber's pole worm) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida>
Trichostrongyloidea> Haemonchidae> Haemonchus.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.289 |
Instability index | 46.41 |
Isoelectric point | 5.59 |
Molecular weight | 94701.56 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP05164
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 123.27| 35| 200| 399| 434| 1
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399- 434 (59.59/36.29) PRVLTAdCIKSVQARCMTKFGPGSSLLDSLDEWERS
595- 629 (63.68/34.79) PSILSA.CLVSTEPEPYLRMFPGFSLNDAYSKKTRS
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 253.86| 83| 200| 2| 96| 2
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2- 96 (126.10/99.76) QMRFEIHEKLS.GEGFYQRSVlfLRERCELfGWlKCMHSAPGNI...VEGPLTW.RALTSKSLPKSSAPTHDDDISlPEPIPYinvaaekDAIRAAPHVV
205- 292 (127.76/72.51) QMEENVLQLLSeRDDIFERAT..YRETLAL.DW.RAKRAAAAAValaVEQRMAEnSAEQGASVAAPEQPPAEPPLE.PEDIPV.......DEPGTLPHVI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 58.06| 17| 31| 492| 522| 3
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492- 508 (30.80/41.12) DSLGRLNDNCL..INLRTR
524- 542 (27.26/ 7.36) DAMGRLWTYILgvLSMETR
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