<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05159

Description Uncharacterized protein
SequenceMGVSWVFEHDKTAKEVERLLEGGGAEQIGTYTVDCLPYTPNDKVEYEPSQVAAQSAHMMTEMMQMFFPLYHILKMTSSNPMWRVVFEHIDEFRASVNRHCSHLESWQIMSYTVATCFFIMWIRRINHSDKPFFQRARSSIYSIIRSLPWVKRRVKADLERARREIEEEVHQYDQKRDFYKFLPEHPLGGEELLSEARQYAAMGERRYMEHYDPRTRNQDLSLCAKIYDLFSHSDPHRSDAFPGARKMEAEILRMCLSMFHGGQEACGVVAGGGTEVMLLACLAYRNRGIARGMYHPEIVAPSTAHPALDKAAELFGMTIRRVPVREDDRVHAAAVKRAIGPHTCMIVASAPNHTTGTVDPIERLSEIAQQFGVPLHVDCCLGGFLLPFMEYCDYSIPTFDFRLPGVTSISIDLHRYGQAPRSCSVLMYRDQSMLRHQCFCNSDWAGGVYATPTLAGGRDGGAVATAWATLLGKGRDGYITACHRVVETTRRLADLLSDIDGITLRGAADLCIVAFETTLGDIYVLVDFMTTKGWHVDPLLSPEAARVPITLRMCEEGVLEAFVEDVIEGLRYLGENPTKTTKTSAFYHMLQTVADRSLVDELSLIRLQAHYSIPPPLDREHRSVRALSEYGRKMSTLEREGLTKEKLSAEKAQ
Length653
PositionHead
OrganismHaemonchus placei (Barber's pole worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Strongylida> Trichostrongyloidea> Haemonchidae> Haemonchus.
Aromaticity0.09
Grand average of hydropathy-0.249
Instability index49.60
Isoelectric point6.24
Molecular weight73868.80
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
carboxy-lyase activity	GO:0016831	IEA:InterPro
pyridoxal phosphate binding	GO:0030170	IEA:InterPro

GO - Biological Process
carboxylic acid metabolic process	GO:0019752	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05159
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.16|      32|      78|       5|      36|       1
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    5-   36 (59.53/40.99)	W..VFEH.DKTAKEVERLLEGGGAEQIGTYTV.DCL
   82-  117 (51.63/34.59)	WrvVFEHiDEFRASVNRHCSHLESWQIMSYTVaTCF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.58|      15|     297|     226|     255|       3
---------------------------------------------------------------------------
  232-  251 (19.82/32.66)	HSDPHRSdafPGARKMEaeI
  535-  549 (27.76/ 7.76)	HVDPLLS...PEAARVP..I
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.27|      12|     253|      46|      57|       4
---------------------------------------------------------------------------
   46-   57 (22.42/16.08)	YEPSQVAAQSAH
  294-  305 (23.85/17.60)	YHPEIVAPSTAH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.24|      29|     253|     131|     160|       5
---------------------------------------------------------------------------
  131-  160 (47.68/35.12)	PFFQRARSSIYSIIRSLPWVkRRVKADLER
  387-  415 (55.55/36.60)	PFMEYCDYSIPTFDFRLPGV.TSISIDLHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.74|      32|     183|     257|     288|       8
---------------------------------------------------------------------------
  257-  288 (60.23/35.30)	SMFHGGQEACGVVAG...GGTEVMLLACLAYRNR.G
  442-  477 (49.51/27.83)	SDWAGGVYATPTLAGgrdGGAVATAWATLLGKGRdG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05159 with Med20 domain of Kingdom Metazoa
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