<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05143

Description Uncharacterized protein
SequenceMATEAETEAAVTVAATAVGKDAERLQQMILNFDAVQMREIFWDVDAEQGIGTVCYEALDLLRSMTDEEKAKCCRDLVQNLLDKENPRYVHIERILTKLFIAAYEREVISLPECCELLVTCTDFTLRHPIDAKKFEFVQSKLHLIDYKGLRSILKLLVVDRMQEMPSQISHYHRQMLLPVENRVAKKFNELFISFRPLAEMVVVIGRPWLFPISTHISFVLIANSWKLEPVSTRIHQRAHLPYRSELFAPQSALLYTLLRQPRGKEAMAWVIRPTSNAPRLQCDELLQMIILEAMSEMEKTDVRVDDAVNQYQWMNITQTVTFSLIQGHASFSRLLKILYESLTETVYRKGRAELMWIILQYVAIFLSQITTEDMQRIADIYNLLYKGEEAFWGVDTDPLFFVRIFVPAAIWINFYTKDVATTPKPSESLQSQIQFLKQTAEADQNPALKNVADHNAVLAAVANAYSNDMETFKKLVLDNVESFLDCKADEREQLPYMVMCHGRRVPLSLILIDSLTIHSRYRLLQMLLLKIHSVIDMTPPLKYPSPAVVDTLARLAATTDYEYAAKQLVLVMTRTLEQLNQMNPNDPAGETNRAKDLLYIFCEIFSYCLVNSPYPLTHKATFLHTSYVALSNSVVHMSGALYAAFEQVLLRFWMWNCPHEMFILSNQLIGKQGKLAYLITSPDTFNDFQPGNFNDRSVNISPELMRCLLLSFFRALKITGLELQTEVLQRINKNFVWPRSTSQTFAAQIPNCTIDDGTDFAQMDELCRYVAQFLYANSEEQIVKYFNEDRNMNNLFCVIYLLICETKKCYPVFFSILKNSNAKQIVIMTNKLADYVIHTTKRIPPSDDATFTTMISALNEMLFNYHLVSFEKFLLSFVLHPTDDDSTQAAFVIIHSMVTFDKDRQAQRKYVKVASFCDLNNRLAFLFHIVPSNKLISNNSVFFAKLAEYYSQFPELTYSEMEMKLRYEMRLDMNMRRLEQQSFIHYGEHMPIYYGNLAERILPVVDVLLFRALEIGIADEIFDNLLSKFKTCYKYHPQPANFLYSVLYCLYKKLGHTPRAQKFVSEICSQVEERDGSNQLVSRVDQILSPPQLCMSLVDRILQGTNYPHQPPSFACKDWRFAELPPAGQALTGACIELMASQYHPNITVRELIEIAFVRPLRQPYAAINAISLILTSLPPSFQQRFFDHIVSVVASKELRDGDPSICFENLEGECFLLTESYLMTNLALCHAYLQHCTNYSLSVLPDFVKDHLVPILETETQLLFVLRLVLPILQRLYDAKERNKQLQDLAVDVYKMTVKVNEMVGRFKYEDTVCDFLYHMKYMYVGDFIKSEAEQAIQKLTSSMREKLVYISHSQASAADAAKTLRHPHGRVAIGRN
Length1378
PositionTail
OrganismEnterobius vermicularis (Human pinworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Oxyuridomorpha> Oxyuroidea> Oxyuridae> Enterobius.
Aromaticity0.11
Grand average of hydropathy-0.047
Instability index43.82
Isoelectric point6.13
Molecular weight158829.20
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05143
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.37|      15|      16|     202|     216|       1
---------------------------------------------------------------------------
  202-  216 (29.54/22.13)	VVIGRPW.LFPISTHI
  219-  234 (22.84/15.11)	VLIANSWkLEPVSTRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.75|      11|      15|     501|     511|       2
---------------------------------------------------------------------------
  501-  511 (19.19/ 9.88)	HGRRVPLSLIL
  518-  528 (19.56/10.20)	HSRYRLLQMLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.44|      29|     296|     685|     718|       4
---------------------------------------------------------------------------
  309-  337 (53.55/28.35)	NQYQWMNIT.QTVTFS..LIQG.HASFSRLLKI
  686-  718 (39.89/33.91)	NDFQPGNFNdRSVNISpeLMRClLLSFFRALKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.91|      13|      16|      59|      71|       5
---------------------------------------------------------------------------
   59-   71 (21.00/13.70)	DLLRSMTDEEKAK
   75-   87 (21.91/14.63)	DLVQNLLDKENPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.64|      10|      16|    1248|    1257|       6
---------------------------------------------------------------------------
 1248- 1257 (18.46/11.54)	FVKDHLVPIL
 1265- 1274 (17.18/10.17)	FVLRLVLPIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.42|      12|      16|    1081|    1096|       7
---------------------------------------------------------------------------
 1081- 1092 (20.97/23.11)	VSRVDQILSPPQ
 1098- 1109 (22.45/ 9.34)	VDRILQGTNYPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     195.96|      46|     296|     607|     652|       8
---------------------------------------------------------------------------
  607-  652 (78.69/41.12)	YCLVNSPYPLTHKATFLHTSYVALSNSVVHMSGALYAAFEQVLLRF
  844-  877 (48.01/22.66)	........PPSDDATF.TTMISALNEMLFNYH...LVSFEKFLLSF
  910-  953 (69.26/35.45)	YVKVASFCDLNNRLAFLF..HIVPSNKLISNNSVFFAKLAEYYSQF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05143 with Med23 domain of Kingdom Metazoa
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