<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05138

Description Uncharacterized protein
SequenceMGTIGDDEYLRCDAENVEEEMRMERIRQSASRHNWAHFNEAFYKNLMDKRIRLDANGKEDWQNAIHFLKKQMPCDDSRETSAQLRYLAENIGCDFETLPNLFKLKSPCISLEINVCGTNVVSSSISIFGSPMKESPRLTSLMASHRWGTILTSLSALRGLLPSNLTRDEKDYCLRSLEILERDLQDTSANNFPLLDKINRGVLGLCYPRTEISPFTIHLVADPKAFFDPKSPSLFSVNEEALMESPLVPCARLCVSASNSPNLFPDRSFLDPQGKWVSSNTGRSLLAAFCLRFGRPIIFCSGALRKLSELCTGELKVKGGLNIYSYLMGDNDDEKKTELIVKLPGCVVQRYELDESMTSTMEDGIVEEICFAHPRDAISIVNIVRSQLTHNFLFESLVRAHHPTACMDGAVPIRLTVSSLHNYELVFEMNRGLFIGTPQ
Length439
PositionMiddle
OrganismEnterobius vermicularis (Human pinworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Oxyuridomorpha> Oxyuroidea> Oxyuridae> Enterobius.
Aromaticity0.08
Grand average of hydropathy-0.221
Instability index47.23
Isoelectric point5.68
Molecular weight49450.10
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05138
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     399.90|     140|     161|     117|     273|       1
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   99-  260 (198.88/173.06)	PNLFKLKS...PCisleinvcGTNVVSSSISIFGSPM...KESPRLTSLMASHRWgTILTSLSALRGLLPSNltRDEKDYCL.RSLE..ILER.DLqDTSANNfPLLDKInrgVLGLCY..PRTEISPFTIHLVADPKAF.FDpkspSLFSVNE.EALMESPlVPcARLCVSASNS
  261-  422 (201.03/136.54)	PNLFPDRSfldPQgkwvssntGRSLLAAFCLRFGRPIifcSGALRKLSELCTGEL.KVKGGLNIYSYLMGDN..DDEKKTELiVKLPgcVVQRyEL.DESMTS.TMEDGI...VEEICFahPRDAISIVNIVRSQLTHNFlFE....SLVRAHHpTACMDGA.VP.IRLTVSSLHN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.74|      22|      23|      25|      47|       2
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   25-   47 (37.78/37.09)	RIRQSA.SRHNWAHFNEaFYKNLM
   50-   72 (35.96/29.20)	RIRLDAnGKEDWQNAIH.FLKKQM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05138 with Med1 domain of Kingdom Metazoa
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