<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05132

Description Uncharacterized protein
SequenceMGIVKEKSTEEKGNDWIQEFVTDIYVGKIAIIDFAVSLKVLVGKYGCSDEQYRTLARALLRVATVSTIPHRNFLHYLESLVISEVLRWADLLEIIAEFRHFQRFACVEALADILCSYAQFIRCSYTSENECVDLAVSVMSLLNWCLLALEYSLKSSNETATQALINCVCTYADNKFVRALLYLNERIGGESVNYVVDAAISFAHSYSSCDHLKVMVESLRQIGNLPIEKIRDNVSGVIKQPHPAILTLVSVFEGFRMTKKVDQMANSFFEMAQILEFPFSCMFEDMIRGSLLIMLDAKETLCEELAASQAFFYVKLPQIIKHLLTLGVPHNDLISALSVICNSKTLLNQVDMKTKTNSFQYLLQQLASVGLLDKDMVDKLREKRSRSMKMSNPELHTMFTKMTSQVHEPLILRANNARIAVDKMLRQNTAVNNVLLKLAGGSGGLFTFDSVCASFCSDGNLTYFSSKLTIINAQHERYVEGMMDDGRQRALAFNLSFILLSRMRFIYSDIRPHELVNGPNRGLSSTQSCFYKFATLYGWTAVDCCGATGALFKMTDMQRQQVFEKVEQLKNDHIYWDPQTINYAELVDNVPYIGEILLEDFKISKSENLNDNIKKVFHAFRDEANFMIVCLVQWICSQPVTEARQRLVQSFIHALEYPLPMNSAQQERMAMTSAVCRRTLDDLLMCDRLREPRFTWIVNCAKRKLPTVPYTLPAANAQSSDAEILKQAFTYARQQSWASPNVLQLINRCNKAGVVENWCMVWLNSMLKLSTNDEMISAGELCLAAGLMSPVPCMLSFARTITDYILEQNVEFGCVEPKALVSARFLVHCLQLAMLAYWRQQKEKQNRFAIDEPERKRIKAEDEDDDEKMNPVEQSVQVIFEKFLRETKAGHLKSTITFVFHFMVCLASAPSSAATKRINQMIPHDLMINLARLDPQTFNLDLYLPLSDLTIVERAKQALKFTCLLRRLGGI
Length971
PositionTail
OrganismDracunculus medinensis (Guinea worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Dracunculoidea> Dracunculidae> Dracunculus.
Aromaticity0.09
Grand average of hydropathy-0.007
Instability index40.86
Isoelectric point6.69
Molecular weight110440.00
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05132
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     742.97|     241|     261|     446|     705|       1
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  446-  705 (384.61/292.46)	FTFDSVCASfCSDGNLtyFSSKLTIINAQH..ERYVEGMMDDGRQRALAFNLSFILLSRM.RFIYSD..IRPHELVNGPnrGLSSTQSCFYKFATlygwTAVDCCGATGALFKMTDmQRQQVFEK..VEQLKNDHI.YWDPQTINYAELVDNVPYIGEILLEDF.KISKSENLNDNIKKVFHAF.RD.EANFM...IVCLVQW.IC..SQPVTEARQRLVQSFIHALEYPLPMNSAQQERMAMTSAvcrrtLDDLLMCDRLREP.RFTwivnCAKRKL
  710-  968 (358.36/225.11)	YTLPAANAQ.SSDAEI..LKQAFTYARQQSwaSPNVLQLINRCNKAGVVENWCMVWLNSMlKLSTNDemISAGELCLAA..GLMSPVPCMLSFAR....TITDYILEQNVEFGCVE.PKALVSARflVHCLQLAMLaYWRQQKEKQNRFAIDEPERKRIKAEDEdDDEKMNPVEQSVQVIFEKFlREtKAGHLkstITFVFHFmVClaSAPSSAATKRINQMIPHDLMINLARLDPQTFNLDLYLP.....LSDLTIVERAKQAlKFT....CLLRRL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.22|      46|      88|     241|     287|       3
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  241-  287 (78.08/64.38)	PHPAILTLVSVFEGFR.MTKKVDQ..MANSFFEMAQILEfPFSCMFEDMI
  329-  377 (68.14/50.08)	PHNDLISALSVICNSKtLLNQVDMktKTNSFQYLLQQLA.SVGLLDKDMV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05132 with Med24 domain of Kingdom Metazoa
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