<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05121

Description Uncharacterized protein
SequenceMYASQHGTSTTSAGVNIAVEANYEWQIQEIAFDGTEKYLKPPSYFDHVAKLARKVDWRGLIGADATYDNPDALPRFASDEEEFHEEKETKPQLEVEGRKGSDAGPWHSVAKNLHEALQQINVLVDTMSVLKTSYLEALTVADTFEMQHNIQDVIQQSKQFQWITKPSAVLENSLKHRVKLNSEIESEKELFFRELKKMREHWRVRKTGNVVFGDLGYKIYAPKYNPKEIFEITRRSSTNASCSTQSESSLQVIVPCDLARRATISVSIEIDTEVILLYLYKLELSYNSDDMNSNDLFSVVDNDLDYMKVDPLKIMEVPWSSALSWAQETLICRDIFSQLSEDAIILQDRIAVVRDGVLIVSLFDNILLKVQLSFYPFERGPLINHGDEYLTRTLRQIFLNDVCYKAVRNQTFVAMPLTMIPDSFDLRGPLAFTDQEIQSRLPKKRLLLQRLIATAAHQLLVNKVVNTLENLLLQKADPQISWKWLRCGAMQSCAVVSAANRSYDYAGKTTFYIRIDSADFYVSTKEGQRIDCKRDERLLTHTINYLICNYMLNTVAMIASKLWQWQILHANINAVDENGEASPTIYLCNQNSTCGIFIQFHLQLPPTIRVRNNLREEELLNVNHADFIVINYNKLVGTSLCRKIDYLCEIMRN
Length653
PositionHead
OrganismDracunculus medinensis (Guinea worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Dracunculoidea> Dracunculidae> Dracunculus.
Aromaticity0.09
Grand average of hydropathy-0.254
Instability index43.33
Isoelectric point5.72
Molecular weight74948.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05121
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     261.60|      75|      80|     472|     550|       1
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  423-  462 (32.17/18.75)	.................................S...FDLRGPLAF...........TDQEIQsRLPKK.RllLQRLI.ATAAHQLLVN
  471-  549 (120.94/110.75)	LLLQKADPQIS..WKWLRCGAMQScAVVSAANRS...YDYAGKTTFYIRIdsaDFYVSTKEGQ.RIDCK.R..DERLL.THTINYLICN
  550-  631 (108.49/84.65)	YMLNTVAMIASklWQWQILHANIN.AVDENGEASptiYLCNQNSTCGIFI...QFHLQLPPTI.RVRNNlR..EEELLnVNHADFIVIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.50|      20|      37|     284|     303|       4
---------------------------------------------------------------------------
  284-  303 (34.91/22.98)	LSYNSDDMNSNDLFSVVDND
  323-  342 (35.59/23.56)	LSWAQETLICRDIFSQLSED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.46|      29|      38|     161|     191|       5
---------------------------------------------------------------------------
  161-  191 (43.45/35.31)	QW.ITKPSAVLENSLKHrvKLNSEIESEKELF
  201-  230 (49.01/33.14)	HWrVRKTGNVVFGDLGY..KIYAPKYNPKEIF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05121 with Med17 domain of Kingdom Metazoa
Unable to open file!