<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05104
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MKNRKGIQFIKGICFVFFLQTELNGLKWKCLTTPLSQRTWTSLEQDPVLSAYARCLQAGILCAWRRQPPQPTGTLAAMQLPDYRIDVVKELWVFWYSHEEPDCLTEYTSHLACSEDGQGNWSVPGIQYETRTLFFKALHNLIERNMLKNGYIRIGKYFTRPYEVPSSDRIHCSPSYVNGISFNFFVHGENIVCATVSVQRQPTLFRLSRRHLDLGKKQPVILGPWSMRAVLLPEQPRIVDSTTPSLQQQSSAPQYGNFTSLSSVAHQVNPVPSSSIDSDTISNSYDGAGTISKAAVDKLWSEWLQFFCLIVNVERNLGSADTVGYIGYTENTSPAKNSLPKMVLVDVDGVHMWYPSSLIVVQASDDLLLRQNEKTINDEDSDFFNSGSNSSSFTARTPPATGGHARLRSTPSFRKRKKRLSECDTGSNAERHNAMYGTMVNGARAAQRFFEESFIAPASSRRKESTESPSSSGLGLLMSAATNDDDCRWNFTDGMRRKDREEGCGCHHCRLQQSSSATALPSLPSQCITLQQGIIYYNHLSYPFVYFFISFLQYDTCIDQESNQSCCTPVNFSNSSLETKKEGSAIFHRRSSSCTRSPSPPRSPPWEKKILATSSETGDSEHNLDWIRESYFRNSRSSSRSGRADLLHEDRHICPKTPDASTIMESPERRRVQRNSVQMFGKIGSCKPIYQNLSPTSRPRSPACDTSQAESLGRMQSKDCLSNDFASSAGKHTPTITDQQPNLINSLRLKKGKKLKGRKRKADEKLEWSGIESLDVSFLTAKVGEDNEDDDNINFTCPSNFKLRECKSVINGEVVESSNAVPHTRSSLNVSTSQSQDVLRSLPVFSQIGSAMPSNAGVNLTPSIFTSDCDTQPLFLDDCNPSAITMVERKSPVDTVVTDSVHLSPPASNERVEPTQILGGTVANVMARVGGPPSVGDYMIYPTPPSVDATQSQQFSPQNTLIQANPTSILYPPTVSYMAAAAAAAVNLCHNIPPVQLPPTVVSETDATTEATPTIKRELENDDERHLGKLHYSIGEKPVYGKFMQLEMALSRKFAGNILAKEFLSLEAKECRMLEGVYADQLKLIKAAVAAREKRKKVGRAPDYLFMRERLRNLAPHSSFTTVRHYRIPYNNGHMFSSHCLPTLQMLPHGMSMNGVPNFVTNGPPFGAASYNGNNSVMSMMMSSGCLPPGGTTIMQPVPSSSRMGVVHMNQQMSMAHLRPLARIPSMPPYASSQTGPLQHPPFMGQSAQFCSPPGVMNAPNPISSFPGGPMCSMSTGPVQSSHMLSGMHGTTPSQPLGANNMHAAGPPNGQFSMQQPQQPFQQLSHFVNNANFNGQVGMTAVNPSQQSIYQQQIMFRCNMNGNLPAQHPIHSSDSYGIDSQGQAPVEPPPPFSQSINQQYAAVHNVQGGSMIYPQSAHMMRQNTLMSQAQNQNMMCGPRTSQNPMMTVPSSIGSPNNGGLFGNRLMNMPHVMDTAAVPPNNIRTHPEGKSLVLAVLLQDTVLDLHYDSVFDACPICSCNGSIRAKELGVYITPPEVLRQPPAQQQLIVSKPTSGFYNSTSNSCNCGFSAVRHRYLSMKAGLFAEDAKEATDINETQSQPAIPHTIWFDSMSGRDMNFIALLREQTLVRDLGGLLDQVTLLSLQCERASQTERIGSDSSKHCEYIISEVDQRELPLVFQAACEVACMEMNCRRPPHDVRSVLLHDWGVQISNEMREPRESECMALLQEIGPILEESLRIARSSPLFGSNNIVEGPLTWRFFDRKALKAAGGTEDDSGPEAVPNIVVASEKDAVITSPQIIRLWEKMSLEPYDQPKDVLYIGVVPDNLICIEKTKKYLMDLSRMYEQCRFGRHIPFSREVLRDGLLRVPTRYPATNPGECDNFLNQVERHIGDNKSLITRLKVYMQYFENEMARILINNDDIFSRDKYRAALAESQIHSVQHISIAAYQCGVSSSDHMPPPSAPGSIIISGQSGDASHGPNSTSGPSSSGVTIGESLTPDGSIGDGSAQNMTNFSSFMTEQLVADGIIAEDEPGTLPHVIVIYLVNPFLLGAEENPLVARVVTVALMRAFNALLYRLNNKRRPQLQLEMIALQNIFDYCGASADFLKDERGRLNGYDQGRLEKSQNERLSSSDSLKTIAFSVYTHSRVVLPDIVRGILPKSMTRFGPASAMVDLLNELERKEPIYYKVPSKPFILAPPSPVMQRPNCDLMQINTDEAVLFVSYCLIGNDWLAATVTDHQGHSLDNCLINLRLKPDHKRVNMRYKQSTQIRDSLYRLWSYILGTLANGTRNWRLVIGRVGRIGHGEFKFWTQILSKSYLKQVGTRMKHVCRACHVMPGTSEVPGVLSACLVSLEPEAHLRVFPSSFQHDDRFLKNSRHRALTTPDDTSCTHILVFPTSPELNLDHQGGNGVAELEEDDFSNLLTEEIGEEFSELIGNGEDLMTNGTGPPPQSASFRLGGNTGIPSEYADVSIENQPLATGYYISTAPASDLPEWFWSACPSAKRRNPVHLKSSLHLNTPNVQQGDDISSFGKGTEACHHQLDSQATADVLRYVLEMYNALSWLNMDLVSGERRSCLPIHIQALMWLCNAVNRFIN |
Length | 2592 |
Position | Middle |
Organism | Brugia pahangi (Filarial nematode worm) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida>
Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.384 |
Instability index | 57.45 |
Isoelectric point | 6.61 |
Molecular weight | 287109.01 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP05104
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 63.49| 17| 50| 1543| 1560| 1
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958- 974 (32.11/18.41) QNTLIQANPTSILYPPT
1543- 1559 (31.38/23.80) QQQLIVSKPTSGFYNST
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 137.76| 35| 39| 1220| 1254| 2
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1220- 1252 (57.37/24.96) .........................PLARIPSMPPYA..SSQTG.....PLQHPPFM.GQSAQFCS
1253- 1294 (47.66/19.40) PP................gvmnapnPISSFPG.GPMC..SMSTG.....PVQSSHMLsGMHGTTPS
1295- 1359 (32.73/10.85) QPlgannmhaagppngqfsmqqpqqPFQQLSHFVNNAnfNGQVGmtavnPSQQSIYQ.QQIMFRCN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 376.11| 119| 169| 9| 146| 3
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9- 146 (193.64/161.16) FIKGICFVFFLQTElNGLkwkCLTTP.........LSQRTWTSLEQDPVlsayarclqagILCAWRRQ....PPQP...TGTLAAMQ....LPDYriDVVKEL.WVFWYSHEEPDCLTEyTSHLACSEDGQGNWSVPGIQ..YETRTLFFKALHNlIERNM
176- 317 (182.46/109.50) YVNGISFNFFVHGE.NIV...CATVSvqrqptlfrLSRRHLDLGKKQPV...........ILGPWSMRavllPEQPrivDSTTPSLQqqssAPQY..GNFTSLsSVAHQVNPVPSSSID.SDTISNSYDGAGTISKAAVDklWSEWLQFFCLIVN.VERNL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 370.84| 123| 534| 810| 947| 4
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649- 787 (174.48/118.90) EDRHICPKTPdASTIMESPERRRVQRnSVQMFGKIGSCKPIYQ..NLSPTsrPRSPACDTsQAESLgrmqsKDClsNDFA.SSAGKHTP...TITDQ...QPNLINSlRLKKGKKLKGrkRKADEKLEWSGIESLDvSFLTAKVGEDN
816- 947 (196.36/158.97) ESSNAVPHTR.SSLNVSTSQSQDVLR.SLPVFSQIGSAMPSNAgvNLTPS..IFTSDCDT.QPLFL.....DDC..NPSAiTMVERKSPvdtVVTDSvhlSPPASNE.RVEPTQILGG..TVANVMARVGGPPSVG.DYMIYPTPPSV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 131.57| 29| 1389| 594| 622| 5
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594- 622 (53.57/27.73) CTRSPSPPRSPPWEKKILATSSETGDSEH
1948- 1976 (51.06/26.03) CGVSSSDHMPPPSAPGSIIISGQSGDASH
1981- 2003 (26.93/ 9.61) .TSGPSSSGVTIGES..LTPDGSIGD...
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 60.37| 18| 1389| 1018| 1037| 6
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1018- 1037 (28.77/24.68) ELENDDERHLgkLHYSIGEK
2410- 2427 (31.59/19.66) ELEEDDFSNL..LTEEIGEE
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 124.82| 39| 166| 1393| 1440| 7
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1380- 1426 (54.83/51.96) SQGQAP.VEPPPPFSQsiNQQYAAVHNVqgGSmiyPQSAHMMrQNTLM
1427- 1466 (69.98/42.92) SQAQNQnMMCGPRTSQ..NPMMTVPSSI..GS...PNNGGLF.GNRLM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 57.04| 15| 534| 1062| 1170| 10
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1135- 1154 (28.41/115.04) MFSSHCLPtlqmlPHGMS.MN
1181- 1196 (28.63/30.34) MMSSGCLP.....PGGTTiMQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 99.05| 29| 813| 1103| 1131| 17
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1103- 1131 (53.73/37.03) DYLFMRERLRNLAPHSSFTTVRHYRI.PYN
1918- 1947 (45.32/29.95) DDIFSRDKYRAALAESQIHSVQHISIaAYQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 88.55| 23| 1645| 535| 557| 20
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535- 557 (46.83/36.38) IYYNHLSYPFVYFFIS.FLQYDTC
2182- 2205 (41.72/31.29) IYYKVPSKPFILAPPSpVMQRPNC
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