<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05101

Description Uncharacterized protein
SequenceMYGHQSIPRSVSAGQLNAMMSHPGMVITSQQMINTPQGVMVSQAGYPQGMINTAQQQMMPSQTHISQQMINTHMGVVQGLNQQGHMNVQHQQMQQMQQVQMAPQQAYIQQQGMSHPNFVNGQARSPAVGPGPQGISQQGTPGRPSSTSGPPSNNPQTPLNVMSTLNPSSQQVSTPATPQQAPSSVQSTTTQDNISTPTIVPPDPVSLARNLLLRDLRYSLQEWSKTAAEVVRPSTLRQDGSSSAMHNPMSVNPQSVNPQSVNPQSVNPLSANPSSVKSLDEPKSVENLEKKILSPSEAYINAFDYFLGTCDQIENDIMVVQEAQKQSVKFDKMFAGELKIVGEMANVNYSQYAQGYVESTARVRNAITRTLKNLNATMERMNAAKIVQKDIEEKMAM
Length397
PositionTail
OrganismBrugia pahangi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.04
Grand average of hydropathy-0.568
Instability index64.14
Isoelectric point7.87
Molecular weight43286.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05101
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     105.64|      21|      21|      32|      52|       1
---------------------------------------------------------------------------
   19-   39 (27.83/ 9.67)	MMS...HP.GMVI.tsqqMIN.TPQGV
   40-   58 (28.44/10.04)	MVSQAGYPQGMIN........tAQQQM
   59-   76 (25.36/ 8.18)	MPSQTHISQ........qMIN.THMGV
   77-  100 (24.01/ 7.37)	V..QGLNQQGHMNvqhqqMQQ.MQQVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.65|      20|      22|     247|     267|       2
---------------------------------------------------------------------------
  143-  161 (25.97/ 6.57)	RPSSTSgPPSNNPQT..PLNV
  174-  190 (26.73/10.81)	TPAT...PQQA.PSSVQSTTT
  247-  265 (33.95/14.28)	NPMSVN.PQSVNPQSVNPQS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.30|      10|      26|     103|     112|       3
---------------------------------------------------------------------------
  103-  112 (19.64/ 9.16)	PQQAYIQQQG
  120-  129 (16.06/ 6.07)	NGQARSPAVG
  130-  139 (19.60/ 9.13)	PGPQGISQQG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05101 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AAEVVRPSTLRQDGSSSAMHNPMSVNPQSVNPQSVNPQSVNPLSANPSSVKSLDEPKSVEN
2) GMINTAQQQMMPSQTHISQQMINTHMGVVQGLNQQGHMNVQHQQMQQMQQVQMAPQQAYIQQQGMSHPNFVNGQARSPAVGPGPQGISQQGTPGRPSSTSGPPSNNPQTPLNVMSTLNPSSQQVSTPATPQQAPSSVQSTTTQDNISTPTIVPPDPVSLA
227
49
287
208










Molecular Recognition Features






MoRF SequenceStartStop




1) RNLLLR
209
214