<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05100

Description Uncharacterized protein
SequenceMNYVDQQQFIMQQGQRMQNPRMISVPTTVTPQHLHRQQRYGMAMMQPGQQPVQIASGQYVQNPQMQPRLMTMSDALSRLPPEVQQMAQQQINAETSAEKKRQVALGFIQGRVRLTQQYPGQGTMNTGGMMISVGLNQQVGMAQGNTQMVRMGTVQSGPVPYPAQNVSLQTGMGQMGPAQVSVQRMPGHYMTNNMNAPQNIQYQSQDPGNVQNYNPQQQITLTQPSSVGPTLQQSSSLHHKGPNSVPTAIYTQHHPENTTATHSTISSKGDKSSDEPLYSQKLELLKPYHEHIKRLLERNRLDGQAPKSKFERLLEIMENRRKVELKLLEKLVVSVRNLIEHDSLCFPLIDALRLESGDTPKTPLPDPWDDFHQYAIKVPEKVMNLVKEEKTKSKESKGVIPVKRIKKEEDSDERIAVICQDGSRLELSQEASDQLRPHNYRFDPEFIPISDDCTEIQVFIENDILLVPPLRLVIPLNYPESKASIWRDRWSYGGVNLVDINTQFDKRLNMAVNCRSITEIINAWKLASLHVLRIGSSSAST
Length541
PositionTail
OrganismBrugia pahangi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.05
Grand average of hydropathy-0.632
Instability index47.99
Isoelectric point8.80
Molecular weight61200.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05100
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     191.26|      29|      29|     137|     165|       1
---------------------------------------------------------------------------
   18-   49 (32.02/11.69)	QNPRMISVPTTVT....P....QH.................lhrqQRYGMAmmQ.PGQ
   50-   93 (26.47/ 8.54)	QPVQ...IASG......Q.Y.VQNpqmqprlmtmsdalsrlppevQQMAQQ..Q.INA
  101-  146 (32.77/12.12)	RQVALGFIQ.GRVrltqQ.YPGQG.......tmntggmmisvglnQQVGMA..Q.GNT
  147-  178 (44.72/18.89)	QMVRMGTVQSGPV....P.YPAQN...................vsLQTGMG..QmGPA
  179-  197 (23.51/ 6.86)	QV....SVQRMPG....H.YMTNN..............................mNAP
  198-  223 (31.77/11.55)	QNIQYQSQDPGNV....QnYNPQ......................QQITLT..Q....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.07|      35|      51|     295|     337|       2
---------------------------------------------------------------------------
  300-  337 (49.03/43.96)	RLD.GQAPKSkfeRLLEIMENRRKVELKLLEKLVVSVRN
  353-  388 (57.04/30.95)	RLEsGDTPKT...PLPDPWDDFHQYAIKVPEKVMNLVKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05100 with Med15 domain of Kingdom Metazoa
Unable to open file!