<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05097

Description Uncharacterized protein
SequenceMTSTEEYVQDATFASLPRTVRGMPLALHASPDGQKLIYCNGNSVYIRSIQNPKECEIYTEHANPTTVAKYSPSGFYIASGDQSGKIRVWDATQPSHILKAEYPILSGPIRDIAWSDDSKRIAVVGEGRERFGHVFLFDTGTSNGNLSGQSRTMSSIDFRPARPYRLVSGSEDNTVALFEGPPFKFLTLFHEHTRFVYCVRYNADSTLFASSGADGKVILYEGTTGQKEGELMDDQCKGVAHAGSVFALCWSPDGQRIATASGDKTIKIWDVSSKKLEKTFVIGKSVDDQQLSIIWTKVFLAGVSLSGFINILDLESGSVSKVLKGHNKPITALTVCSEKSLAFTADFEGNITRWCLNSGDSERLLPAVHSSQVSDMCLSPNGDLVSIGWDDSIAFTSFPGSLDNVQSNKVKLSSQPRQVALGSSGKIAVVACQKSVTVFSDGKQMVSENIEYEASCVAVAPDSRLTAVGSQDGKVHIYELNGNQMKEIKTISQTGSITSLSWSPNGSFLVATDANRKVIPYSVDNDYNCVTEKDWTFHSARVSCSAWSPDSRFVATGGIDTNVIVWDLKHSGEHPIIIKGAHTMSPINGIDWLGSNRIITVGQDSVLKIWTVSV
Length614
PositionTail
OrganismBrugia pahangi (Filarial nematode worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Spiruromorpha> Filarioidea> Onchocercidae> Brugia.
Aromaticity0.08
Grand average of hydropathy-0.183
Instability index34.19
Isoelectric point5.99
Molecular weight66740.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05097
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     262.84|      42|      42|     478|     519|       1
---------------------------------------------------------------------------
   47-   87 (51.95/33.76)	RSI..QN....PK......ECEiYTEH..ANPTTVAKY.SPS..G..FYIASG...DQSGKIR
   89-  125 (18.56/ 6.52)	WD...........atqpshILK.AEYPilSGPIRDIAW.SDDskR..IAVVG...........
  237-  268 (31.44/17.03)	.....................K.GVAH..AGSVFALCW.SPD..GqrIATASG...DKTIKI.
  478-  519 (63.64/43.30)	YEL..NG..NQMK......EIK.TISQ..TGSITSLSW.SPN..G..SFLVAT...DANRKVI
  521-  564 (51.41/33.32)	YSV..DNdyNCVT......EKD.WTFH..SARVSCSAW.SPD..S..RF.VATggiDTN..VI
  566-  609 (45.85/28.79)	WDLkhSG..EHPI......IIK.GAHT..MSPINGIDWlGSN..R..IITVGQ...DSVLKI.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.76|      39|      40|     370|     408|       2
---------------------------------------------------------------------------
  340-  391 (37.59/21.47)	SLAFTAdFEG........nitrwclnsgdserllpavhSSQVSDMCLSPNGDLVSIGWDD
  392-  434 (58.63/37.64)	SIAFTS.FPGSLDNVQSN................kvklSSQPRQVALGSSGKIAVVACQK
  435-  472 (54.54/34.49)	SV..TV.FSDGKQMVSEN...................iEYEASCVAVAPDSRLTAVGSQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.15|      13|      40|     168|     180|       3
---------------------------------------------------------------------------
  168-  180 (23.02/17.23)	SGSEDNTVALFEG
  210-  222 (23.13/17.34)	SSGADGKVILYEG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05097 with Med16 domain of Kingdom Metazoa
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