<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP05073

Description Actin-interacting protein 1
SequenceMSYSNKYTFAALPRTQRGTPLVLGADPKGKNFLYTNGNSVIIRDIENPAISDVYTEHSCQVNVAKYSPSGFYIASGDASGKVRIWDTVNKEHILKNEFQPIGGPIKDIAWSADSQRMVVVGEGREKFGHVFMAETGTSVGEISGQSKPINSVDFRPARPFRIVTASEDNTIAVFEGPPFKFKCTKQIGSHKGGVYGISWSPDGKQLLSCSGDKTCAVWDIDTMQRSITFNMGNAVENQQVSCLWLGKHLISVSLSGVINYLDIENPDKPLRVLMGHNKPITCLALEPTTKTVYTASHDGCVTSWNTSTGEGRHIGGTGHGNQVNGMSVGKNGSLLTCGIDDSLRLAVPANEGEAPTYTESVVTLGSQPRAMDHVIEDDLTVVVTVKELIVLMGNTKQSTLPVSYEPTCVAIDPKLKHIAVGGGNSRVHIYSLDKRSLLPRSELTHLGTVTSLAYSPNSRYLVAADANRKLILYDVEGYTLAHNKEWGFHTARVNCVAWSPDSKRVASGSLDTSVIIWSVDTPAKHTVIKNAHPQSQITGLAWLDDESVVSVGQDGNTRVWNVPKA
Length565
PositionTail
OrganismPapilio xuthus (Asian swallowtail butterfly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Papilionoidea> Papilionidae> Papilioninae> Papilio.
Aromaticity0.07
Grand average of hydropathy-0.238
Instability index34.31
Isoelectric point6.99
Molecular weight61256.57
Publications
PubMed=26354079

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP05073
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     418.73|      42|      42|     418|     459|       1
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    3-   42 (33.76/14.75)	YS.NKYT..FaaLPR....T.QR.GTPLVLGADPKGK.nFL...YTNGNS.V.II
   43-   84 (44.44/21.55)	RDIENPA..I...SDVYT.E.HS.CQVNVAKYSPSGF.yIA...SGDASGKV.RI
   85-  130 (36.95/16.79)	WDTVNKE..H..ILKNEF.Q.PIgGPIKDIAWSADSQrmVV...VGEGREKFgHV
  131-  173 (36.88/16.74)	FMAETGT..S..V..GEIsG.QS.KPINSVDFRPARPfrIV...TASEDNTI.AV
  174-  217 (49.52/24.79)	FEGPPFK..F..KCTKQI.GsHK.GGVYGISWSPDGK.qLL...SCSGDKTC.AV
  274-  303 (23.12/ 7.98)	.................M.G.HN.KPITCLALEPTTK....tvyTASHDGCV.TS
  304-  345 (51.61/26.12)	WNTSTGE..G..RHIGGT.G.HG.NQVNGMSVGKNGS..LL...TCGIDDSL.RL
  430-  472 (44.43/21.54)	YSLDKRS..L..LPRSEL.T.HL.GTVTSLAYSPNSR.yLV...AADANRKL.IL
  473-  516 (52.43/26.64)	YDVEGYT..L..AHNKEW.GfHT.ARVNCVAWSPDSK.rVA...SGSLDTSV.II
  517-  559 (45.60/22.29)	WSVDTPAkhT..VIKNA..H.PQ.SQITGLAWLDDES..VV...SVGQDGNT.RV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP05073 with Med16 domain of Kingdom Metazoa
Unable to open file!