<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04970
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MHNAVLDVVLTCLAEKVPTCQAYARIVEAARAKGGLAVLQAELTDVLVTMAFASKPMPPLLLDYLDALCMKCAYDTDVTAFEEGRVLLVLLRKLPDAAQDVDQATVNMLSQLVLQAAGDPTMSDTVSLSYFIEGFDNDFLAFWRATLHLVRDADGAGARLFTRLVAQAARDGWPTLDESPALENIQEEIQQLAASVDAMHTNRPTSDGDATRHAVATLQRGLSSTMVDDLFDETNVSVSSPIQPLWGTRAYLAYATSLHVAWQQSQGAQTRRPVLPVPCSPEPEMFLLAHTLANGDMDWTQKCLAVQGVFQAHLHHAAEPASDLCCAFLLELFVACIHTAMEALQHEASRRNARWWRAVVSGLLPPLSVFLMANVPATNESTLTWHEVMHALFALCQSVQTWSDMDAPLTEPSPSVMSQLPGIWEAWMMSFTPSSATTTPPWRGVHADDVMPLASSHVQTYMSHVQSCLTDKPAQLGPLFEQALHDPSLQAVLMMETRRILQQWSESHSADMSRVAVICHAIEEHSPELMDILSLYMKPRVVCEALEIVLSHMHDSLWQNASDLETVTQVIILLEGVSLLSTPCMSYVGEARVFYSMPTPLLDVPSLPNPMHDLLVRWCQAMTSAHGISDTLLSASPPWTLYRLAPTLVSHLLDGYRHGYFDKQALASALSYFTQAPLRYALPNALHWLITYTQQTMARAQYAPKMSSDVSLCLELLHMLTRAEGCTTLIRSMISAPLRAMLQHERIAAIASQTGLQVPTWSESLPTNWNSYKPTKYSLAMMLRTACDLPPSSTLPQTIETLCVAPKRPRELASQLFSAALCTASDDATKSKLLAATFALVRFDPLCALPLSVVRMALLHWDMSLATPEQMRHVGRILVLSAALAKHLPGGPDGVQGLIDDLAAFSIEPLVHVLRLEVV |
Length | 919 |
Position | Tail |
Organism | Malassezia pachydermatis |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Ustilaginomycotina>
Malasseziomycetes> Malasseziales> Malasseziaceae> Malassezia.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.129 |
Instability index | 54.39 |
Isoelectric point | 5.38 |
Molecular weight | 101100.58 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP04970
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 93.00| 27| 54| 364| 391| 1
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364- 391 (44.89/27.40) LPPL.SVFLMANVPATNESTLTWHEVmHA
420- 447 (48.12/25.12) LPGIwEAWMMSFTPSSATTTPPWRGV.HA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 302.94| 87| 167| 596| 688| 2
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596- 672 (109.46/59.29) .........................SMPTpLLDVPSLPNPMHD..LLVRWCQAMTSAHGISDTLLS.ASPPWTLY....RLAPTLVSHllDGYRHGYFDKQALASALSY
676- 772 (122.50/62.10) APLRYALPNALHW........lityTQQT.MARAQYAPKMSSDvsLCLELLHMLTRAEGCTTLIRSmISAPLRAMlqheRIA.AIASQ..TGLQVPTWSESLPTNWNSY
773- 845 (70.98/28.05) KPTKYSLAMMLRTacdlppsstlpqTIET.LCVAPKRPRELAS..QLFSAALCTASDDATKSKLLA.AT..FALV....RFDP..........................
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 151.72| 48| 51| 81| 128| 3
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81- 128 (79.42/43.69) FEEG..RVLLVLLRKLPDAAQDVDQATVNMLSQLVLQAAGD..PTMSDTVSL
131- 182 (72.30/39.16) FIEGfdNDFLAFWRATLHLVRDADGAGARLFTRLVAQAARDgwPTLDESPAL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.45| 18| 21| 517| 536| 8
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517- 536 (28.82/19.32) VICHAIEEHSPELMDilSLY
541- 558 (32.63/16.56) VVCEALEIVLSHMHD..SLW
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