<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04958

Description MED25 (Fragment)
SequenceMEVDQPTLADVVFVIESSAINGAYINELKTNYILPTLEHFTQGAIDEREYLIAERHATLYGIVTYRTASNLLEPVCATYGPFVQPQKVIDTIERLPLVGGGMESHAHMAEGFATAHSCFDDINEQRHMLDQSQLQRHCILICNSPPYQMCVNENWKYKGKSCEQLAALFMERKINLSIIAPRKMPVLFKLYMKADGDQPITTKNYAKNIRHLVLLKGYSLKERAPSPNSMPVAAAVVAVSQQHQMVAPPNAAQNQVQQALGNNPNAQQSAQAQNMPMDTAVPQQQPQQQQQQQQQVMNINAMQQNQPQQQPGPGGQTPQGLMNAQQQQQQLMQQQQQQQQFVPNQMQNANFQQNVVPGQNRWMHPNQAGQRPPFMQPTGNNMPLQANQNPNSALIARMNAPPNQTVSSIQQQQQLAQQQQQQRLQMLNPHQFNQLQQQLAQQQQQQQQHPQQQQQQQQQQQVNPNANANMMPAVSSAGQVPALQQQQAATQQQQQANQQQQQQQQQQQPQEQSSLREKIWTGVLEWSEKAKNDQQKIPHTLQCTVCTNIKDGEPEIKADNWPSKLLMQLMPKHLVGNIGGQFLKDSKMVIFRPTPGDALDSLAKMMTSGFAGCVHFSPTCDLKVLILLYTPERNAFLGFIPNNQTMFVERLRKVIQQKQSHGNMQQQQQQQQQQQQQMPPQQQMQQMLQQQGKTPMELQQQQQQQQQMQQDNSQQQQQPHYNQYAQMNMQMNAGPVGPGAVGGGNGPGGMPMQPQMQMNMMQQQQQQQQQQRMPLGVPGANPNLQQQLQQQQQQRMMRPMMANNNPGLRQLLQHQAASPGNQFRPQMGGQPNQMGAGGPMVGNRNFDDGGYEFM
Length854
PositionUnknown
OrganismDrosophila busckii (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.05
Grand average of hydropathy-0.899
Instability index68.27
Isoelectric point8.76
Molecular weight96599.04
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04958
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     931.08|     160|     163|     223|     383|       1
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  223-  383 (311.77/61.06)	RA.PSPNSMPVAAAVVAVSQQHQMVAPPNAAQNQVQQ...........aLGNNPNAQ............QSAQAQNMPMDTAVPQQQPQQQQQQQQQVMNINAMQQNQPQQQPGPGGQTPQGLMNAQQQQQQLMQQQ.QQQQQFVPNQMQNAN......FQ.QNVVP.GQ.....NRW............MHPNQAGQRPPFMQPTGNNMP
  385-  467 (135.00/20.61)	QAnQNPNSALIA..........RMNAPPNQTVSSIQQ...............Q...Q............QLA................QQQQQQRLQML..NPHQFNQLQQQ..........LAQQQQQQQQHPQQQ.QQQQQ.................Q.QQVNP.NA.....N...................................
  468-  588 (152.41/24.47)	.....ANMMP......AVS.........SAGQ..V..................PALQ............Q.........QQAATQQQQQANQQQQQQ......QQQQQPQEQSSLREKIWTGVLE....WSEKAKND.QQK...IPHTLQ.CT......VC.TNIKD.GEpeikaDNWpskllmqlmpkhLVGNIGGQ...FLKDS..KM.
  593-  747 (203.73/35.83)	...PTPGDALDSLAKMMTSGFAGCVHFSPTCDLKV..lillytpernafLGFIPNNQtmfverlrkviqQKQSHGNM.......QQQQQQQQQQQQQMPPQQQMQQ.MLQQQ....GKTPMELQQQQQQQQQMQQDNsQQQQQPHYNQYAQMN......MQ.MNAGPvGP.....GAV.................GGGNGP..........
  748-  839 (128.18/19.01)	..........................................................................GGMPM..........QPQMQ....MNMMQQQQQQQQQQ.....RMPLGVPGANPNLQQQLQQQ.QQQRMMRP.MMANNNpglrqlLQhQAASP.G......NQF.............RPQMGGQ.PNQM...GAGGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04958 with Med25 domain of Kingdom Metazoa
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