<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04957

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSNSVNISVETTCENQIREIAYDGTELYQPPPTLSESLAKCAARIDFSKTSLEDLKKEEKSAAAAEEDAKDANIFQESLWPWDAVRNKLKDAYTEICVLSDVISIAKDKRYLVLDPLLEDSDDTKPIVQVYTRKKAISQAAQVLLSGAERLRNAHSELRNPNVKDFHIELLRLRQNWRLKKVSNGAIIGDLSYRTAGSKFGMSGTFEVAKAEDVLDEETTTSNANSSGGNTPNTQISTNNGIQPNGSSSLRVIVPAELQGVAYIKVITQKDQEDLCTAQVNLMGHGPNITAQVGVWQKTLEFAQNVLFCKELFAQLAREAIQLQAPIPHVVIGNQIRATLLPNIQLIISLCHSTSFDSNQPAPINDHDHVLEHSLHQLLREVHYKNSHHPFPHPASAPLGPSKKRMIAGPTAADRDSLLEMTKTQTILEQIIAQAQHIFMRKRTQYVLDTLARDVKDPQIVSHWNAMNSPTMSCVKINIVTHGYDAFGRTSLVIHVKERSLKCICRDGRVMRLSYEPQELRDLILCQINSHQISCLVSLARCMAWTVLSNSNHLGIGKVEPLGNASSCLLASPNSDRMIAVQIRCDPQIDVKVYIARSPRQDFFPTPLVPEKFWENLGGNFKEVRFDKIEGKSFLNKMEFLMASLTSNTA
Length650
PositionHead
OrganismDrosophila busckii (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.06
Grand average of hydropathy-0.295
Instability index40.77
Isoelectric point6.84
Molecular weight72479.93
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04957
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.05|      50|     162|     364|     415|       1
---------------------------------------------------------------------------
  316-  377 (69.39/46.61)	LAREA..IQLQAPIPHvvignQIRATLLPNIQLIISlcHSTSFDSnqpapINDHDHVLEHSLHQ
  378-  434 (76.66/60.09)	LLREVhyKNSHHPFPH.....PASAPLGPSKKRMIA..GPTAADRdslleMTKTQTILEQIIAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.38|      61|     365|     124|     189|       2
---------------------------------------------------------------------------
  124-  189 (96.91/70.93)	TKPIVQVYTRK.KAISQAAQVLlsgaeRLRNAHSELRN...PNVKDFHIE.LLRLRQ..NWRLKKVSNGAIIG
  490-  557 (88.47/54.93)	TSLVIHVKERSlKCICRDGRVM.....RLSYEPQELRDlilCQINSHQIScLVSLARcmAWTVLSNSNHLGIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.60|      20|     332|     103|     123|       4
---------------------------------------------------------------------------
  103-  123 (30.25/26.22)	ISIAKDKRYlVLDPLLEDSDD
  438-  457 (35.34/25.46)	IFMRKRTQY.VLDTLARDVKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04957 with Med17 domain of Kingdom Metazoa
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