<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04955

Description MED27
SequenceMDKLNLTLTAVKNLRSSVRQCFEQLADGTDGEGVEESRNKFVHDFQDRFGAINSQLREVEQLINGLQVPATAYHLGNTTFLAQETSQDRQALYPQLVNSYKWIDKVHDHSFLAFNNLNQNTLRRSYNYCSQKRQRLPFTSFNNDPDHIDKLLSEINHPPHTSYKVLRPFGSNAVAIVSISNVLKAAIVFKGVLIEWVTIKGYDEPLDHDDLWAESRYEVFRKVQEHAHSAMLHFFSPTLPDLAVKSYVTWLNSHVKLFLEPCKRCGKYIANGLPPTWRDLRTLEAFHEECRNS
Length293
PositionTail
OrganismDrosophila busckii (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.11
Grand average of hydropathy-0.477
Instability index39.99
Isoelectric point6.89
Molecular weight33792.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04955
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.05|      31|      36|     212|     242|       1
---------------------------------------------------------------------------
  212-  242 (55.82/34.12)	WAESRYEVFRKVQEHAHSAMLHFFSPTLPDL
  250-  280 (59.23/36.56)	WLNSHVKLFLEPCKRCGKYIANGLPPTWRDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.77|      36|      38|      19|      56|       2
---------------------------------------------------------------------------
   19-   56 (53.49/36.57)	RQcFEQLADG..TDGEGVEESRNKFV..HDFQDRfGAINSQL
   57-   96 (52.27/26.96)	RE.VEQLINGlqVPATAYHLGNTTFLaqETSQDR.QALYPQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.67|      18|      24|      99|     116|       3
---------------------------------------------------------------------------
   99-  116 (35.06/19.30)	SYKW.IDKVHDHSFLAFNN
  125-  143 (28.62/14.71)	SYNYcSQKRQRLPFTSFNN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04955 with Med27 domain of Kingdom Metazoa
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