<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04949

Description Elav (Fragment)
SequenceVDFMMANTGATGVDTQAQLMQTAAAAAAVAATNAAAPVQSAAAVAAAAQLQQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVAAQQQQQQAQQQQQVAQQAQAVVQQQQQVQQAVVAVQQQQQAQQVQQAQQQQQQQQQQQVVPPSPVQTNTNGNGTSSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNKAK
Length513
PositionTail
OrganismDrosophila busckii (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.05
Grand average of hydropathy-0.293
Instability index48.36
Isoelectric point9.07
Molecular weight54694.89
Publications









Function






Annotated function


GO - Cellular Component
ribonucleoprotein complex	GO:1990904	IEA:InterPro

GO - Biological Function
RNA binding	GO:0003723	IEA:UniProtKB-UniRule

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04949
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.82|      38|      44|      62|     105|       1
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   21-   62 (51.70/17.65)	QTAAAAAAVAATNAAApvQSAAAVAAAAQLQQQQQVQQAilQ
   69-  107 (67.72/17.29)	QQAVAAAAAAVTQQLQ..QQQQAVAAQQQQQQAQQQQQV.aQ
  108-  137 (44.41/ 9.64)	......QAQAVVQQQQ..QVQQAVVAVQQQQQAQQVQQ....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.22|      19|      26|     238|     256|       2
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  237-  255 (31.06/20.80)	F...VNYVRP..QDAEQAVNVLNG
  454-  476 (15.40/ 6.25)	PfgaVQSVK.ivKDPTTNQCKGYG
  477-  495 (25.76/15.88)	F...VSMTNY..DEAAMAIRALNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.41|      27|      30|     150|     176|       3
---------------------------------------------------------------------------
  150-  176 (45.83/28.08)	VVPP......SPVQTNTNGNGTS..SQNGSNGSTE
  182-  209 (35.90/20.42)	IVNY......LP.QTMTEDEIRSlfSSVGEIESVK
  210-  236 (20.68/ 8.71)	LIRDksqvyiDPLNPQAPSKGQS..LGYG......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.52|      25|      28|     334|     360|       5
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  334-  360 (39.31/27.15)	TRAIIalNGTTPSSCTDPIVVKFS...NTP
  363-  390 (39.21/21.52)	TSKII..QPQLPAFLNPQLVRRIGgamHTP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04949 with Med15 domain of Kingdom Metazoa
Unable to open file!