<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04939

Description Cdk8
SequenceMDYDFKMKTQMERTKVEDLFNYEGCKVGRGTYGHVYKAKWKETSDGKEYALKQIDGTGLSMSACREIALLRELKHQNVITLIRVFLSHNDRKVFLLIDYAEHDLWHIIKFHRAAKATKKQVVVPRGMVKSLLYQILDGIHYLHSNWVLHRDLKPANILVMGDGNERGRVKIADMGFARLFNAPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPQDKDWEDIKKMPEHHTLTKDFKRSTYSACSLAKYMERHKIKPDSKAFHLLQKLLLMDPNKRITSEQAMQDQYFQEEPLPTQDVFAGCPIPYPKREFLTDDDQDDKTDNKRQQQQQQQQMNPNEPNAKRVRLSGQGNQQDFHHQQQQQQQQQQQQQQQQQQQMLFNQQQSFQQRFN
Length437
PositionKinase
OrganismDrosophila busckii (Fruit fly)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Diptera> Brachycera> Muscomorpha> Ephydroidea> Drosophilidae> Drosophila.
Aromaticity0.10
Grand average of hydropathy-0.800
Instability index51.01
Isoelectric point8.77
Molecular weight51500.08
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04939
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.54|      28|      29|     374|     402|       1
---------------------------------------------------------------------------
  327-  369 (34.55/12.20)	EQAMQDQYFQEEplptqdvfagcpiPYPKREFLTddDQDDKTD
  374-  401 (53.99/24.51)	QQQQQQQMNPNE.............PNAKRVRLS..GQGNQQD
  417-  435 (36.00/13.12)	QQQQQQQMLFNQ.............Q...........QSFQQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.00|      27|      47|     158|     184|       2
---------------------------------------------------------------------------
  125-  148 (15.84/ 7.29)	........RGMVKsllyqILD.G..IHYLHsNW.VL
  158-  184 (48.53/37.39)	LVMGDGNERGRVK.....IADMG..FARLF.NA.PL
  204-  233 (34.63/24.59)	LLLGARHYTKAID.....IWAIGciFAELL.TSePI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.71|      16|      27|     239|     256|       3
---------------------------------------------------------------------------
  239-  256 (23.28/21.49)	EDIKtSNPYHHdQLDRIF
  268-  283 (31.43/18.10)	EDIK.KMPEHH.TLTKDF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04939 with CDK8 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TSEQAMQDQYFQEEPLPTQDVFAGCPIPYPKREFLTDDDQDDKTDNKRQQQQQQQQMNPNEPNAKRVRLSGQGNQQDFHHQQQQQQQQQQQQQQQQQQQMLFNQQQSFQQRFN
325
437










Molecular Recognition Features

Cannot open file output1!




MoRF SequenceStartStop




1) NAKRVRLSG
2) NQQDFHHQQQQQQ
387
398
395
410