<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04922

Description Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein)
SequenceMASCEDEVMRIGKKFEKMIQGTKSMDNALELLDALSALPVNINVLTKTRIGMTINDLRKKTSDENVSKRAKSLIKEWKSLLENKNHKGNGIARDVMPRTDSASSNLSEDSGSRSATSHSTPSTTVKNPTPPRPAPARLFSGDETRNKCTEMILNALRSRELPDGTLDPEDLAIRVEKKLFETHRGTGNTYKAALRSRVFNLRDKKNTALRDNVLTGVVSPEKYFCLDPSSNVFPVHVCFLCSSPLFFTSLNYIFNCFRFALMTSEEMASDEMKSQREKFTKQAIDEHQMAVQEGTPSDMFKCGKCGKKNCTYHQVQTRSADEPMTTFVFCRECGNRWKFC
Length340
PositionUnknown
OrganismAnisakis simplex (Herring worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Ascaridomorpha> Ascaridoidea> Anisakidae> Anisakis> Anisakis simplex complex.
Aromaticity0.07
Grand average of hydropathy-0.592
Instability index47.27
Isoelectric point9.00
Molecular weight38315.38
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04922
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.08|      17|      35|     143|     159|       1
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  143-  159 (30.02/23.63)	ETRNKCTEMILNALRSR
  181-  197 (30.06/23.67)	ETHRGTGNTYKAALRSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     265.70|      84|     201|      38|     124|       2
---------------------------------------------------------------------------
   38-  124 (132.96/89.32)	LPVNINVLTK.....TRIGMTINDLR..KKTSDENVSKRAKSLIKEW..KSLLENKNHKGNGIARDVMPRTDSASSNLS.EDSGSRSAtshSTPSTT
  233-  326 (132.74/81.83)	FPVHVCFLCSsplffTSLNYIFNCFRfaLMTSEEMASDEMKSQREKFtkQAIDEHQMAVQEGTPSDMFKCGKCGKKNCTyHQVQTRSA...DEPMTT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04922 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NHKGNGIARDVMPRTDSASSNLSEDSGSRSATSHSTPSTTVKNPTPPRPAPARLFSG
85
141










Molecular Recognition Features






MoRF SequenceStartStop




1) IKEWKSLL
74
81