<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04920

Description Uncharacterized protein
SequenceLFWDLSGNVDVDELTCGEAINVLRSMNEEEKSHCCKATLNALLNKDNPRYVQLERVLSSIFIAACNEGVLSLSECCELLILCTDFTLSTPIDARKFEYMQRNLHLIDYKGLRNILKLLVVERMQEVPSTITNHQRHMLLPVENMLLTLIDRQLNLLPCLFTITELHRVSSNSRAFLLPRVAKKFNETFISFRPLTEMVTVIGRPWLYPIASHISFPVSTSSWKLEVATTKLHQRAHLPYKSELFAPQSSLLYTLLRQPRGKDTLSYVLRQNTNMTPQRIQCDELLHMIILEAMSEMEKTDTRLDDAANQYQWMNITQTVTFSLLHGMASFSRLLKILYESLSETVYRKGRDELMWVILQYVAVYIGKVSNEDMIRIADIYNLLYSDEQCWSGADTDPLLFVRFFVPAAIWIHFYKKPNSQASEVLPKPSESLLRQIQFLQEKTSDSDPAIQNVADHNAVLAAVANAYSNDMQNFHKLVLTAVDMFLDGIGEDATGSLWRLPHGIICLPKKTPLPLPLIDSLTFHSRNHLFQMCLHKLSTMLNVQQSAKLPSPASIDTLVRLASTTEFEYGVKLVLTLMPRALASISANANIGATNQPDRSRDLLYILCDMLSYRLINYPLPVIPKVNVILSCYSALSNNQVQMNVALYSALEQVMLRYWMWNSPQEMIVLCNALIGKQGKLTALISSPNSFGEPQHGSSISHERPSHANLHVSPEMLRSLLLSMFRALKLTGVEMASEVLQRCNANFSWPLSVSRTFSTQLMGCSIDDGSEVAPNEELFHCVDQDHRRTHEYLCTQSEESLIKYFTIERRHTLFCVIYNHLIYDSKKLHPVFYSMLNSMTAKDIIVMVNKFVDYFIYIFKKNPPSDDQTFTTVSSFSDVRNRLGFLFHFIPSNKIVNTNSSFFNKMSEYYSQYPELTYREMEVKLRREMQLELQLRQMEQPVINPELHMPIYYGNLAERILPVVDILLQRALELAVADQLFNPLLKSFKPCYKYHPQPAAYMYNVLYCLDNTLSHTAKARLFVSEICGQLEERDGKYALLTPSFIQDNHQLSLPSQFCQVLVDRILQASHYPHQPPPFVYRDWRFAELAPAGQALTGACIELLASPHDPSVTARALIDLVFIRPLHQPYATINTVALILTALPSSFQRIFYDHIVSVLDSEALTQGDPSVCFESLESECFLLTENQLLTNLALGHAYLQHCNTSSLAALPEFVRDKLAPKLVTEAQLIFVLRLVVPILQRFYDMKERSKQIQDLAVDVYKMTVKVNERVGVLKYEDAICDLLYHMKYMYVGDFVKNEAEQAIQRLSPSMRVKLNEFPIPKKGHLLQCSWYWGNMSWLEAEKVLMTYPLGTYLIRDSASDRYIFTISYKTTDSVHHTRLPQHGGKFCLGGPNSLVRSESLMAFVETLEGCDERGVCLLMHQKGEKSEHCLQRLTKRDKFKARQLFYSRLHDSNGALIDRAMAVFLPGPSTFTGEDTAEIYVHGSRAVVNCVCDTLSCIDNVQAAKAGEFTKRAFFNSKLTLDDVLSLSYLLSAETQRQRALALHSTQIGSVMPDVRTSLIELICSLEAGIDFADDVTFDWDLFRSHLRDIISQLQTINRRAQRGSLITDGISVVMLGKTNVGKSSLLNRIAERDVAIVSDVEGTTRDALETRIELSSVPVIFTDTAGIRIAQDFLEAEGISRTIARAKQAHLLLAVIDGSKNADITTEVNELLKRCHCEDKSNIVVACNKADLIKQTFEQSYLLSLKWKVVLTSCLNTSGIDQLVINMLSLFFILWYSLSNSFSNLFSLSTTSCSKYVAVELDVIKEHISEICPEEGNDALLSRYRQRILLNDAISVLQKVEGNRDSALIAEYLREASDLIGEISGTIVNEEILDRIFSSFCIGK
Length1884
PositionTail
OrganismAnisakis simplex (Herring worm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Ascaridomorpha> Ascaridoidea> Anisakidae> Anisakis> Anisakis simplex complex.
Aromaticity0.09
Grand average of hydropathy-0.040
Instability index43.19
Isoelectric point6.15
Molecular weight213977.41
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GTP binding	GO:0005525	IEA:UniProtKB-KW
GTPase activity	GO:0003924	IEA:InterPro

GO - Biological Process
tRNA modification	GO:0006400	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04920
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     123.25|      28|      33|    1024|    1051|       1
---------------------------------------------------------------------------
 1024- 1051 (47.87/24.56)	SEICGQL..EER...DGK...YALLTPSFIQDNHQL
 1055- 1085 (45.67/23.11)	SQFCQVL..VDRilqASH...YPHQPPPFVYRDWRF
 1096- 1127 (29.71/12.63)	TGACIELlaSPH...DPSvtaRALIDLVFIRPLHQ.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.80|      36|     794|     741|     810|       2
---------------------------------------------------------------------------
  764-  810 (49.97/95.48)	CSIDDGSEVApNEELFhcvDQDHRRTH.EYLCTQSEeslikyfTIERR
 1563- 1599 (61.83/29.08)	CSLEAGIDFA.DDVTF...DWDLFRSHlRDIISQLQ.......TINRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.41|      24|      34|     497|     521|       3
---------------------------------------------------------------------------
  497-  521 (40.31/29.43)	LWRLPhGIICLPKKTPLPLPL.IDSL
  534-  558 (36.10/20.74)	LHKLS.TMLNVQQSAKLPSPAsIDTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.59|      31|     794|     138|     193|       4
---------------------------------------------------------------------------
  138-  193 (40.86/52.95)	LLPVENMLLtlidrqlnllpclftitelhrvssnSRAFLLPRVAKKFNETFISFRP
  960-  990 (52.73/24.60)	ILPVVDILL.........................QRALELAVADQLFNPLLKSFKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.10|      21|     268|     626|     657|       7
---------------------------------------------------------------------------
  626-  649 (22.68/48.32)	VNVILsCySALSNNQVQMnVALYS
  666-  686 (35.42/19.91)	EMIVL.C.NALIGKQGKL.TALIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.65|      35|     677|    1141|    1184|      19
---------------------------------------------------------------------------
 1147- 1184 (57.26/47.30)	QRIFYDHIVSVLDSealTQG..DPSVCFESLESECFLLTE
 1826- 1862 (51.39/24.13)	QRILLNDAISVLQK...VEGnrDSALIAEYLREASDLIGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04920 with Med23 domain of Kingdom Metazoa
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