<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04914

Description Uncharacterized protein
SequenceMYGCSQSTSAQPAGVNIAVEAGHEWQIQEIGPPTYSDHVAKMAHRVDWRKLVGADASYDNPNALPREDDEESSEEVEKPKLEMEDRKVPDAGPWHTVAKNLHEALQQINVLVDTLAVLKMPYLEALTVMDSFEMHHNMQDVVQQSKQFQWVTKRKSLLEVISVLEHASKLRLKSDVEVESDKEMFFRELKKMREQWRVRKTGNVVYGDLGYRIFGSKYNPSELFDITRRSLPTSNDGNTAPQEGSALQVQVPCDLIRRSTIAVSIEIDDMDSKDLFAMAENDLDYMRVEREKATEVHWSLALQWAQESLICRDIFNQLSKEAVLLKEHIAMVRDGVLVVSLFDNVLLRVELSLHPFEEGELPVKGDEYLGRSLRQLFVSEQCTRWVRHQMFIAMPLTSLPESLDLRGPYAMSANEIECRNKPKRLLLERLMSIAAHYVLTNKVTSSLERYLLRVSDPQVTWNWLRSTSAISAVIVTASNRNYDYIGKTTFYIRIEGDEFYVMTKEGQRIDCRRDEEMLTYTIEYLICNYMLNTVTMVANKLWQWQVLHANVNAIDEDAEPSPTLYICNQSATRAIFMQFHMKAPPTIRIRKCCPEKPLVGEEADSFILLNYDRLIGTSLCRKIDNLCAMLKS
Length632
PositionHead
OrganismAscaris lumbricoides (Giant roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Ascaridomorpha> Ascaridoidea> Ascarididae> Ascaris.
Aromaticity0.08
Grand average of hydropathy-0.339
Instability index51.28
Isoelectric point5.49
Molecular weight72678.41
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04914
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.61|      19|      34|      36|      54|       1
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   36-   54 (33.71/23.19)	SDHVAKMAHRVDWRKLVGA
   73-   91 (31.89/21.55)	SEEVEKPKLEMEDRKVPDA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     293.05|      96|     165|     148|     253|       2
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  148-  253 (147.30/127.45)	FQWVTKRKSLLEvisvlEHASKLRlkSDVEVES..DKEMFFRELK.KMREQWRVRKTGNVVYGDLGYRIFGS....KYNPSELF.DITRRSLPTSNDgNTAPQEGSALQVQvpC
  315-  418 (145.75/99.08)	FNQLSKEAVLLK.....EHIAMVR..DGVLVVSlfDNVLLRVELSlHPFEEGELPVKGDEYLGRSLRQLFVSeqctRWVRHQMFiAMPLTSLPESLD.LRGPYAMSANEIE..C
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.14|      20|      20|     426|     445|       4
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  426-  445 (32.03/22.07)	LLERLMSIAAHYVLTN..KVTS
  447-  468 (30.11/20.32)	LERYLLRVSDPQVTWNwlRSTS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04914 with Med17 domain of Kingdom Metazoa
Unable to open file!