<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04905

Description Uncharacterized protein
SequenceMVACAAVSVQLSCPDWMQPQSAGCSAVDQLKQQLLLAVENENVDEANDVLAKLEKSGMTKEILEVTRVGAAVNDVRKRMVESAPQLSKRCRALIKCWQKLADPRPTSSCGSHSNSATPNLVSPVVRRGLTPGTPARGRLTSAALSTGSRSSLTSPAVSSPSGSYAPPQNRCSPRNGAVVNMHKSFSVGSDLTKRVTDDVIQSGQDDILRNGKRKAENAHHDDSGLLNGFGADKRSKGGSAVASPATGPHSVVAARRANVQPTSELVAQLSENLPRYMAINLSERESQLKREQDQQSQAQQQHGSLHPAAPSPAVSSSEISKKKERKGRSSKKSAAEQEQLQTFADTTRIPIQEEKTTDERQSVASEGTTSNTVTVPTRHGRFEWSAILPTLDTLRHREEFKATQSDDPSKSYVVSVHGRKVPHISIYLVGVLALPYVDTGVPDFLQYEYPQSTRFYAEENFMYGAPRPS
Length469
PositionUnknown
OrganismAscaris lumbricoides (Giant roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Ascaridomorpha> Ascaridoidea> Ascarididae> Ascaris.
Aromaticity0.04
Grand average of hydropathy-0.605
Instability index60.68
Isoelectric point9.12
Molecular weight50822.27
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04905
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     237.43|      51|     155|     147|     198|       1
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  110-  145 (34.38/11.63)	GS.HSNSATPNLVSPvvRRGLTPG.....TPARGRLTSAALS........................
  147-  197 (86.53/44.60)	GS.RSSLTSPAVSSP..SGSYAPP.QNRCSPRNGAVVNMHKSFS.....VGSDLTK......RVTD
  201-  234 (20.91/10.24)	..................QSGQDD.ILRNGKRKAE..NAHHDDSgllngFGAD..K......R...
  239-  284 (41.22/18.48)	....SAVASPA.TGP..HSVVAAR.RANVQPTSELVAQLSENLP...ryMAINLSE......R...
  303-  358 (54.39/24.28)	GSlHPAAPSPAVSSS..EISKKKErKGRSSKKSAAEQEQLQTF........ADTTRipiqeeKTTD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04905 with Med26 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DLTKRVTDDVIQSGQDDILRNGKRKAENAHHDDSGLLNGFGADKRSKGGSAVASPATGPHSVVAARRANVQPTSELVAQLSENLPRYMAINLSERESQLKREQDQQSQAQQQHGSLHPAAPSPAVSSSEISKKKERKGRSSKKSAAEQEQLQTFADTTRIPIQEEKTTDERQSVASEGTTSNTVTVP
2) PTSSCGSHSNSATPNLVSPVVRRGLTPGTPARGRLTSAALSTGSRSSLTSPAVSSPSGSYAPPQNRCSPRNGAVVNMHKSFSVG
190
105
376
188










Molecular Recognition Features






MoRF SequenceStartStop




1) EISKK
318
322