<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04902

Description Uncharacterized protein
SequenceMNAPVGTVFGHQEDPEKFTQAVAHIESKALDIKSNIEQLLFMLDLQEKVPWPEMLDKFSSLASAMAQLQSVLRKSALPSGVEDFGKLLRKHLLVPHRLSNDIDANLQVQDPEKFAQAVAHIESKALDIKSNIEQLLFMLDLQEKVPWPEMLDKFSSLASAMAQLQSVLRKSALPSGVEDFGKLLRKHLLVPHRLSNDIDANLQVRFGVVSPRCRIVGGLDPGALVSNSSPSRRRIALFRPGSIEAGIEWRCTRPDYINLQVNKQIVAMNKHLGSLLNSLADNARSQADAHADVPTYNNHDTQKLVRAVINGEGLRPTRGAVSTENTQQNVSAPGASSTTHIPPRSAGGATAQQQRR
Length356
PositionHead
OrganismAscaris lumbricoides (Giant roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Ascaridomorpha> Ascaridoidea> Ascarididae> Ascaris.
Aromaticity0.04
Grand average of hydropathy-0.315
Instability index60.74
Isoelectric point9.02
Molecular weight39135.23
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04902
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      84.18|      12|      15|      67|      78|       1
---------------------------------------------------------------------------
   67-   78 (22.56/13.92)	QLQSVLRKSAL.P
   83-   95 (19.53/11.15)	DFGKLLRKHLLvP
  163-  174 (22.56/13.92)	QLQSVLRKSAL.P
  179-  191 (19.53/11.15)	DFGKLLRKHLLvP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     257.68|      70|      95|      14|     108|       2
---------------------------------------------------------------------------
   14-  108 (128.97/102.88)	DPEKFTQAVAHIESKALDIKSNIEQLLFMLDLQEKVPWPEMLDKFSSLASAMAqlqsvlrksalpSGVEdfgkllrkhllvpHRLSNDIDANLQV
  110-  204 (128.71/102.66)	DPEKFAQAVAHIESKALDIKSNIEQLLFMLDLQEKVPWPEMLDKFSSLASAMAqlqsvlrksalpSGVEdfgkllrkhllvpHRLSNDIDANLQV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.25|      15|      16|     210|     224|       3
---------------------------------------------------------------------------
  210-  224 (28.25/16.64)	SPRCRIVGGLDPGAL
  229-  243 (26.99/15.62)	SPSRRRIALFRPGSI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04902 with Med8 domain of Kingdom Metazoa
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