<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04895

Description Uncharacterized protein
SequenceMPVPANIAMQRQQRYNMTMIQPGQQPMQIGPNQYVQAAQMQPRASISINDALLRLPPEVQQMAQQQINAEMNPERKKQIALNIIQTHRMRIPQNYQNSGPMGGSAVMVNMGGNQQVGNIGGGQIIRMSTSQGGPMPQGPMYPAQNAVMQAGMAQMAPAQVTMQRVASHGYLPSGVPTSGHMVQQFAAAQEQQDGMACTQNATNSEADKASEEPLYGQKLEQLKAYQDQIRRIIERNRLDGQQPKPKYERLLEIMEGLRKVDLPLLEKLIVSVKSTVERTSLCYTLLEIVRTDPCNLPGDAFRVLSSDPWTDFRQYSIKVPEEVLALTGEGSVSPSKRPASSFSGPASKRIKKEDALPHTVAFDSHDEKKIRTVPEQRIIVDCSDGSRVELSQEASEQIRTARFRFDADLLPISNECTEVHVLIENDTLLVPPLRLVVPTNYPESAASIWRDQWSFGGHSLSEANVHFEKRLAMANNIGSISEIINAWRIASEHVIRISGK
Length500
PositionTail
OrganismAscaris lumbricoides (Giant roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Ascaridomorpha> Ascaridoidea> Ascarididae> Ascaris.
Aromaticity0.05
Grand average of hydropathy-0.468
Instability index49.73
Isoelectric point7.13
Molecular weight55538.72
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04895
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.86|      31|      33|      69|     101|       1
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   69-  101 (48.81/30.38)	AEMNPERKKQIALNIIQTHRMRIPQNyqNSGPM
  105-  135 (53.05/27.34)	AVMVNMGGNQQVGNIGGGQIIRMSTS..QGGPM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     305.38|     100|     146|     227|     333|       2
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  227-  333 (148.51/140.74)	DQiRRIIERNrlDGQQPKPKYERLLEIMEGLRKVDLPLL..EKLIVSVKSTVERTSLCYTLLEIVRtdPCNLPGDAFRVLsSDPWTdFRQYSIKVP....EEVLALTGE.GSVS
  375-  481 (156.87/119.03)	EQ.RIIVDCS..DGSRVELSQEASEQIRTARFRFDADLLpiSNECTEVHVLIENDTLLVPPLRLVV..PTNYPESAASIW.RDQWS.FGGHSLSEAnvhfEKRLAMANNiGSIS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.71|      32|     112|      24|      59|       3
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   24-   56 (54.60/30.90)	QQPMQIGPNQYVQA..AQMQPrASISINDALLR..LP
  137-  172 (48.11/22.14)	QGPMYPAQNAVMQAgmAQMAP.AQVTMQRVASHgyLP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.85|      17|      34|     173|     189|       4
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  173-  189 (30.32/20.70)	SGVPTSGHMVQQFAAAQ
  210-  226 (29.53/19.97)	SEEPLYGQKLEQLKAYQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04895 with Med15 domain of Kingdom Metazoa
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