<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04890

Description Uncharacterized protein
SequenceMDHALEHLGTLFDLPVTVSILINTRIGLVVNRLRRKCGDKAIAQFARNLIKTWKNLVEKKYKEGDPAFNVLVSSIRSRRRYHSTEKSVDSRSKRSAAAQKKPTSSPVVDNDLAFNEARSRSRKVLLKVLTSGDLPDGSLDPEELSVEVEASLFEMNRGSVEKYMTAVHNHVFSLMHKKNTLRVRVLTGAVGAAEFAHMTTEDMATDELRRMRNEFIEQVFKQLREEDENSSDQYGPPDMMKCERCGKRNCTYTQMQTRSADEPMTTFAYCRECGKRWKF
Length279
PositionUnknown
OrganismAscaris lumbricoides (Giant roundworm)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Spirurina> Ascaridomorpha> Ascaridoidea> Ascarididae> Ascaris.
Aromaticity0.07
Grand average of hydropathy-0.628
Instability index56.56
Isoelectric point9.25
Molecular weight31946.15
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
nucleic acid binding	GO:0003676	IEA:InterPro
zinc ion binding	GO:0008270	IEA:InterPro

GO - Biological Process
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04890
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.06|      17|      26|     230|     248|       1
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  230-  248 (31.16/25.09)	SSDQygP.PDMMKCERCGKR
  259-  276 (29.90/16.81)	SADE..PmTTFAYCRECGKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.46|      19|      25|      21|      41|       2
---------------------------------------------------------------------------
   21-   41 (27.16/23.55)	LINTRIGLVVNRLRRkcGDKA
   49-   67 (34.30/21.60)	LIKTWKNLVEKKYKE..GDPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.33|      24|      24|      89|     112|       3
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   89-  112 (39.21/27.79)	DSRSKRSAAAQKKPTSSPVVDNDL
  116-  139 (38.12/26.84)	EARSRSRKVLLKVLTSGDLPDGSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04890 with Med26 domain of Kingdom Metazoa
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