<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04885

Description Uncharacterized protein
SequenceMCCLVATQMRPGSVSACSLMRQFSQAWDALSSLQNSSRNYVQPGKTVNVNCQSHENTRTAPIHGGYQNDNRMCPDVTDIPASRNTSWGLDGSLNNHNKYTGQINESSNCMSGDIDDDNILENIDVDQIVEKYQSTCTPKPSISKFPPVTPNADKDGFARQGDDVLPPDLCLDCIHGYKLGLCPEAAIHLQELKDNLIAISNELLDNCETLNSTQISKLRHDRSQLNKQIQQLEKYTQSSNLNEERKKSHFSASTAPSASYVYETPQQTGACNGSKQYDTQAYMGNGTRGSTFQSLPSFSVDNYSTSSGPVEREEFIPKIIEVNYIEGSGDKRWSSHDFPWTKELEVNNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALVCHGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKVVKSDNLLRHLENLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVASNLQEFGHKCAFYHGTMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQIRVKHMISQGSIEQSPMASGYNRSNMINPGSILETNTENLMRMVSYCENDVDCRRLLQLVHFGEKFNSSTCHKTCDNCLKITNFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSFSQMVKKNRHETVSLHGAGKHLAKGEASRILHHLVVEDILVEEVKKSDYYGSVSSILKVNELKVCNLFAGHRIILRFPSSVKALKPGKSDATPAKGSLTSGKPNVIPTNAPQPQTEVDLNLSAKLYTALRMLRTTLVKEAGDSVFAYHIFGNATLQQMSKRVPRTKEELLDINGIGKAKVSKYGDEILETIENTINEYYKLDKASSGSKGSADSAKRRRESNGDPYANAEDDDALTNSTGRSKKRTIKRQNKKAVIYDSAEEDYFSGCHDEDLDFDLIEIDALDQVTCKNASGRVLPQWTTS
Length1083
PositionUnknown
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy-0.477
Instability index47.29
Isoelectric point6.57
Molecular weight121269.75
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04885
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.85|      20|      20|     655|     674|       1
---------------------------------------------------------------------------
  639-  656 (24.62/11.75)	..GINKPDVRFVIHHSLPKS
  657-  676 (34.79/19.31)	IEGYHQIRVKHMISQGSIEQ
  680-  694 (22.44/10.14)	ASGYNR...SNMINPGSI..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.05|      16|      20|     331|     348|       2
---------------------------------------------------------------------------
  331-  348 (26.80/24.13)	KRWSSHDF.PwtKELEVNN
  350-  366 (25.25/14.09)	KVFGNHSFrP..NQREVIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.35|      15|      15|     702|     716|       3
---------------------------------------------------------------------------
  702-  716 (29.42/17.42)	LMRMVSYCE..NDVDCR
  718-  734 (22.93/12.04)	LLQLVHFGEkfNSSTCH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.43|      60|     410|     125|     192|       4
---------------------------------------------------------------------------
  125-  192 (91.79/85.34)	VDQIVEKyQSTCTPKPSISKFPPVTPN.ADKDGFARQGDdvlpPDLC..LDCIHgyKLGlCPEAAIHLQEL
  537-  599 (103.64/67.83)	VNCIVFR.QSFNRPNLWYSVVPKTKKClEDIDKFIRENH....FDECgiIYCLS..RMD.CEKVASNLQEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.01|      15|      15|     837|     851|       5
---------------------------------------------------------------------------
  822-  839 (19.73/11.89)	VEEVKKSDYYGSvssILK
  840-  857 (20.28/12.43)	VNELKVCNLFAGhriILR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04885 with Med34 domain of Kingdom Viridiplantae
Unable to open file!