<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04882

Description Uncharacterized protein
SequenceMNQIAATKEPEEASEKTNEAVSYEEEDPMEQESVIPATVFCIRLRQPKSNLLYKMSVPEICRNFSAVSWCGKLNAIACASETCARIPSSTGNSPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTCCPRALLIANFHGRVTIWTQPSQGPANHVLDTGCWLREHEWRQDIAVVTKWLSGVSLYRWFSSKQSAPANSRSTFEEKFLSQQCQTSARWPNFLCVCSVFSSGTVQLHWSQWPSSNATPPKWFCTSKGPLGCGPSGIMAGDAIITESGAMHVAGVPIVNPSTIVVWEVMPGPGSGFQVIPRTSTNNGVPPPISSPNWIGFAPLAAYLFSWQDYLLSEEKQGKIQTNQNHGGSIQLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAVVIAEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQTKVDLSIPPTNDFKNHQASAGGMNTDVQKVAEFGFDKSKRVYFDPFDLPSDVRTLARIVYSAHGGEIGIAFLRGGVHIFSGPNFTPIDNYQIGVGSAIAAPAFSSTSCCSASVWHDTSKDQTILKIIRVLPPAIPISQVKTNSSYWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYCPNLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQLSSETLSSIDPEAVAVEPALVPCVQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGNNRNVVASPTQSSATPATSQGGQNGTTSSSGSTQMQAWVQGAIAKISSTTEGVSNPAPNPPISGHSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLSRYVQRTTDTNTQKPQPNGSAPAKVEEPVKPGSTLVRPDDGQAGRVNQLVTAPKGGEEPSPGRSRIGTGNAGQGYTFEEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDSDDLDSTNEAPKLVNLDFSSLETCDVYDGADGLLPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTALWKTGLEGIWYKCIRCLRQTCAFSSPASTNLPSQNDKDIWWISRWAHGCPMCGGTWVRVV
Length1213
PositionTail
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.08
Grand average of hydropathy-0.180
Instability index44.73
Isoelectric point6.16
Molecular weight131977.84
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04882
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     137.84|      44|     527|     619|     678|       1
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  619-  641 (34.87/ 9.90)	..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RAIAERF.WWSLLVGVDWWDAVGC
  642-  663 (14.73/24.21)	TQSAAEDGIVSLNsVIAVLDAD............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1148- 1169 (29.53/ 6.75)	......................fhslpsaqhrqqycpnldrikcrlleganaqevramvldmqarllldmlgkgiesalinpsalvpdpwqlssetlssidpeavavepalvpcvqayvdsvldlashfitrlrryasfcrtlashavtagtgnnrnvvasptqssatpatsqggqngttsssgstqmqawvqgaiakissttegvsnpapnppisghssfmpisintgtfpgtpavrligdchflhrlcqlllfcfffrrtqlsryvqrttdtntqkpqpngsapakveepvkpgstlvrpddgqagrvnqlvtapkggeepspgrsrigtgnagqgytfeevkvlflvlmdlcrrtaglqhplpvsqvgsnniqvrlhyidgnytvlpevveaslgphmqnmprprgadaaglllrelelhppaeewhrrnmfggpwsdsddldstneapklvnldfssletcdvydgadgllprkrrmserdaafglntsvglgaylgimgsrRDVVTAL.WKTGLEGI.WYKCIRC
 1171- 1202 (58.71/27.72)	RQTCAFSSPASTN.LPSQNDKD...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................iWW.....ISRW.AHGC
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     411.32|     126|     171|     278|     410|       2
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  278-  410 (212.19/125.09)	ESGAMHVAGVPIV.NPSTIV........VWEV.....MPgPGSGFQviPRTSTNNGVPPPISSPNWIGFAPLAAYLFSWQDyLLSEEKQGKIQTNQNHGGSIQLHC..SPVSNFSayvSPEAAAQSAATTTWGSGVTAVAFDPT..CGGSV
  441-  584 (199.13/100.53)	ESSLQHVVLHPIFgNPTSSMggqppmqtVWQTkvdlsIP.PTNDFK..NHQASAGGMNTDVQKVAEFGFDKSKRVYFDPFD.LPSDVRTLARIVYSAHGGEIGIAFlrGGVHIFS...GPNFTPIDNYQIGVGSAIAAPAFSSTscCSASV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.45|      33|     348|     730|     764|       4
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  730-  764 (50.54/44.16)	PWQlSSETLSSID..PEAVAVE.PALVPCvQAY..VDSVL
 1079- 1116 (45.91/30.27)	PWS.DSDDLDSTNeaPKLVNLDfSSLETC.DVYdgADGLL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     246.36|      77|     115|     769|     852|       5
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  769-  852 (117.62/72.45)	HFITRLRRYASFC....RTLASHAVTAGTGNNrnvVASPTQSSATPATSQGG.QNGTTSSSgSTQMQAwvqGAIAKISSTTEGVSNPAP
  885-  966 (128.74/62.57)	HFLHRLCQLLLFCfffrRTQLSRYVQRTTDTN...TQKPQPNGSAPAKVEEPvKPGSTLVR.PDDGQA...GRVNQLVTAPKGGEEPSP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.12|      16|     266|     152|     173|       6
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  152-  173 (21.21/31.66)	QPSQGPANhvldTGcWlREHEW
  425-  440 (34.91/20.89)	DPDEGPSI....TG.W.RVQRW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04882 with Med16 domain of Kingdom Viridiplantae
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