<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP04875

Description Uncharacterized protein
SequenceMANNSQPSSMQFRPVIQAQQGQQFVPMNSQQFGPAGHAIPSSNVGMPVIQGQQLQYSQQMQQLTPRPMQPGHLAPSSQPIPMPYVQTNRPMSSIPPHSQTVPPLSNHMPGLPVSGAPPHSSYSFTPSYGQQHDNANALAQYQHPPQMLAPPGGQPWPSSASQSVAPSTSVQPAGLQSSGATLTDAVTNATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQKAANQGMQSETSDTPNVVVSSIATSTAANAASLNPSLTSNGPASSPSSVIPIASTDSQQLVSGLLGTSVSHSAVTSSTTGVEPSSAGTTSAVPVVVTGSSGLPENSPQLSKMPPIVENQASQDFASANGSSPQNIEEAKKALAEVGKNNVIPSEEKTIDDETLVYANKLEAKNAFKALLESVNVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERYNAVERPRDREDLFESYMVELERKEKENAAEEHRRNIAEYRKFLESCDYVKVNSHWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQRRIQKDRVRRGERKNRDAFRKLLEEHVATGFLTAKTQWREYCLKVRDLPQYQAVASNTLGSTPKDLFEDVAEDLEKQYHEDKTLIKDTIKSGKIIVVTTSVFEEFKAAVLEDAACQTISDINLKLIFEELLDRAKEKEEKEVKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKERKREEEKFKKEKEREEKRKEKEKKEKDREREKDKSKERHRKDETDSDQDMADVHGYKEEKKKEKEKERKHRKRHQSSIDDVDSEKEDKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKREHWDVSRKSGGHEELEDGELGDDVEN
Length999
PositionUnknown
OrganismPhaseolus angularis (Azuki bean) (Vigna angularis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Vigna.
Aromaticity0.07
Grand average of hydropathy-1.114
Instability index56.13
Isoelectric point6.14
Molecular weight114421.57
Publications
PubMed=26460024

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP04875
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.55|      37|      40|     198|     235|       1
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  198-  234 (74.41/56.40)	WQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERAD
  239-  275 (72.14/49.39)	WKEFTSSDGKKYYYNKVTQQSTWSIPEELQLAREQAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     523.71|      64|      66|     461|     524|       2
---------------------------------------------------------------------------
  408-  457 (25.61/ 9.86)	...........................QNIEE.AKKA.LAE.VGKNNVIPSEEKTIDDEtlvyanklE.......AK............NAF.KALLES..V
  461-  524 (102.16/63.61)	SDWTWEQAMREIIND.K...RYNAL..KTLGE.RKQA.FNEYLGQRKKLEAEERRMKQK........R.......AR............EEF.TKMLEE..C
  529-  592 (92.60/56.90)	SSMRWSKAISMFEND.E...RYNAV..ERPRD.REDL.FESYMVELERKEKENAAEEHR........R.......NI............AEY.RKFLES..C
  597-  666 (82.29/49.66)	VNSHWRKIQDRLEDD.D...RYLRL..EKI.D.RLLV.FQDYIRDLEKEEEEQRRIQKD........RvrrgerkNR............DAF.RKLLEE..H
  676-  755 (52.52/28.75)	TQWR.EYCLK..VRDlP...QYQAVasNTLGStPKDL.FEDVAEDLEKQYHEDKTLIKD........T.......IKsgkiivvttsvfEEFkAAVLEDaaC
  759-  799 (47.45/25.19)	SDI.................NL............KLI.FEELL.DRAK.EKEEKEVKKR.......qR.......LA............DDF.TNLLYT..F
  804-  862 (76.99/45.93)	TSSKWEDCKSLFEET.Q...EYRSI..GDESY.SREI.FEEYITYLKE.KAKEK..ERK........R.......EE............EKF.KK..EK..E
  868-  922 (44.09/22.84)	KEKEKKEKDREREKD.KskeRHRKD..ETDSD.QDMAdVHGYKEEKKK.EKEKERKHRK........R..................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     202.75|      25|      28|      75|      99|       3
---------------------------------------------------------------------------
    5-   30 (27.94/13.55)	..SQPS..S.....MqfrPVIQ.............AQQGQQFV...........PMNSQ
   34-   71 (23.22/10.01)	PAGHAI..PssnvgM...PVIQgqqlqysqqmqqlTPRPMQ.............P...G
   75-   99 (52.74/32.19)	PSSQPI..P.....M...PYVQ.............TNRPMSSI...........PPHSQ
  103-  121 (33.49/17.72)	PLSNHM..P...........................GLPVSGA...........PPHSS
  126-  154 (21.15/ 8.45)	PS.................YGQ.............QHDNANALaqyqhppqmlaPPGGQ
  157-  172 (18.62/ 6.55)	PSSAS................Q.............SVAPSTSV...........QP...
  358-  381 (25.58/11.78)	PSSAGTtsA.....V...PVVV.............TGS..SGL...........PENS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.21|      24|      24|     942|     965|       4
---------------------------------------------------------------------------
  923-  938 (20.87/ 7.69)	....HQS.....SIDDVDSEK.EDKE
  942-  965 (42.21/23.45)	KSRRHGSERKK.SRKHANSPE.SDNE
  967-  992 (37.13/19.70)	RHRRHKREHWDvSRKSGGHEElEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      66.77|      17|      22|     312|     330|       5
---------------------------------------------------------------------------
  286-  300 (19.25/ 8.96)	.TSD..TPNVVVSS...IATS
  312-  330 (25.42/21.52)	LTSN..GPASSPSSVipIAST
  335-  353 (22.11/11.31)	LVSGllGTSVSHSAV..TSST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP04875 with Med35 domain of Kingdom Viridiplantae
Unable to open file!